Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swit_1496 |
Symbol | |
ID | 5200201 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingomonas wittichii RW1 |
Kingdom | Bacteria |
Replicon accession | NC_009511 |
Strand | - |
Start bp | 1652608 |
End bp | 1654833 |
Gene Length | 2226 bp |
Protein Length | 741 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 640581043 |
Product | periplasmic sensor diguanylate cyclase/phosphodiesterase |
Protein accession | YP_001261997 |
Protein GI | 148554415 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 28 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGCTGACGG GGCTGGTGCG CCTCGGCGAT CGCGCGGGCA CCGAACCGCG CGAGGCGCTC ACCTCCCAGA TCATCGCGCG GACGATCTTC ATCGTGCTGC TCATGGCGGC GATGCTCGGC GGTTTCCTCT GGTACGCCGC GCGCAAGGCT GACGAACTGT CGATCGATCG TCAGCAGAAG CTGATCGCCA CCGTCCTCGA ACAGAATTTC CGATCGATCG CGCATGACCA GGAGGTGGCG ACCGTCTGGG ACGACGCGGT CGAGCAACTG GCGCGCCGGC CGATCGACCA GGACTGGATC GACGATAATC TCGGCGTCTG GCTCTACACC TATTACGGCC ATGACGAGGT GTTCATCGTC GACCCGCAGG ATCGGCTGGT TCATGCGATG CGCGGCGGCC GGCGCGAGGA CGCGGCGCGC TATGCCCGGT CGATCGGCAC GACCGGCCGG GGGCTGATCG CCGAGCTGCG CGCCAAGATG CGCGCCGGCG CCAAGGTATC GCGGCAGGGG ACGGTCCTCT CTCCGGGCGC GATCGACCTC GCCACCATCC ATGGCCGTCC CGCGATCGTC AGCGCGAAGC CGATCGTCAC CGACACCGGC GAGCGGCCGG TGCCGCCGGG GAAGGAATAT GTCCATGTCA GCATCCGCTA TCTGGACGGC AGCTTCATCG CCGACCTCGC CCGCCGCTAT CAGCTCGAAG GAGGCCATTT CTCGCGCCGG CCGCCGCGCG ACGCGGAAGA CAGCACGGTC GCGCTGCGGA CCCGATCGGG CGCGGGCATC GGCTATTTCG CCTGGGAGCC CTTCCGGCCC GGCCGCGCGA TGCTGCGGCA GGTCGGCCCG GTGCTGGTCG TATCGCTGCT GCTCGTCTTC GCGCTGGTCG CCTGGCTGTT GCGCCGGATC AGTCGCGGCA CGCGACAGCT CAGCGCCGCC AAGTCGCAGG CCCAGCATCT GGCCGACCAT GATCCGCTGA CCGGGCTCGC CAACCGCGCG TTGTTCGAGC GGCGGCTCAA CGAGCGACTG GGCGAGATCT GCCTGACCGG GGAGACGCTG GCGCTGGTCT ATGTCGATCT CGACCATTTC AAGAACGTCA ACGACCATCT CGGCCATCCG ACCGGCGACC AGCTGATCCG CGCGCTGGCG GACATATTGA GCGAGCTGGC GCCCGGCGAT GTCGTCGCCC GGCTGGGCGG GGACGAGTTC GCGATCATCC ACGGCTCCGA CAATTCGGCG GCGACCGCCG AGCAACTCGC GCGCAGCATC CATCGGACGC TGGCGCGGCC GATCGACCTC GGCAATGGCG AGGTGCTGAT CGGCGCGAGC ATCGGCGTCG CGGTGGCCCC GCAGGACGGG CTCGACCGGG TCGAGCTGGT CCGCAAGGCC GACATCGCGC TCTACGACGC CAAGCGGGGC GGCCGCCGCC GGCACAGCTT CTATGCCGAC ACGATGGGCG AACGCATCCG CGATCGCCAC GAGATCGAGG CGGAGCTGCG CGAGGCGATG CGCACCGGCG AAGGGCTCGA CATCGCCTAC CAGCCCTATT TCGCCGCCAA GAGCGGGCTG CTGCTCGGCG CCGAGGCGCT GATCCGCTGG GACCATCCGG TGCGCGGCCG GATGCTGCCC GCCCAGTTCG TGCCGGTCGC CGAGGAGTGC GGGCTGATCG AGACGCTGGG CGAATGGGTG CTCGAACAGG CCTGCCTGGT CGCGGCGCGC TGGCCGGCGG GCACCATCTC GGTCAACCTG TCGGCGATGC AGCTTCGCAA TCCGGCGCTG GCCGAGCGGG TCTATGCGAT CCTGCGGCGG ACCCGGCTGT CCCCGAGCCG GCTCGAGCTG GAGATCACCG AGACGAGCTT CGTCGACAGC AGCGAGAAGT GCCGCGCCAA TCTCGGCTGG CTGCGCGACA TCGGCGTGCG GATCGCGCTC GACGATTTCG GCACCGGCTA TTCCTCCTTC CGCCACCTGC GCGGCTTCGA GGTCGACCGG ATCAAGATCG ACCGCAGCTT CGTGTCGACG ATCCAGCCGG GCCAGGCGGG CAGCCCGGTG ATCCAGGCGA TCGTCGACCT GGCGCGGCTG AGCGGGCTCG AAACCACCGC CGAGGGGGTG GAGACCGAGC AGCAGCGGCG CTTCCTGACG AGCATCGGCT GCGACGTGCT GCAGGGCTTC CTGCTGGCGG AGCCGCTCGG CGCGACGGCG GTCGAGGCGC GCTTCTTCGC GGAGCTACAC CAGTAG
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Protein sequence | MLTGLVRLGD RAGTEPREAL TSQIIARTIF IVLLMAAMLG GFLWYAARKA DELSIDRQQK LIATVLEQNF RSIAHDQEVA TVWDDAVEQL ARRPIDQDWI DDNLGVWLYT YYGHDEVFIV DPQDRLVHAM RGGRREDAAR YARSIGTTGR GLIAELRAKM RAGAKVSRQG TVLSPGAIDL ATIHGRPAIV SAKPIVTDTG ERPVPPGKEY VHVSIRYLDG SFIADLARRY QLEGGHFSRR PPRDAEDSTV ALRTRSGAGI GYFAWEPFRP GRAMLRQVGP VLVVSLLLVF ALVAWLLRRI SRGTRQLSAA KSQAQHLADH DPLTGLANRA LFERRLNERL GEICLTGETL ALVYVDLDHF KNVNDHLGHP TGDQLIRALA DILSELAPGD VVARLGGDEF AIIHGSDNSA ATAEQLARSI HRTLARPIDL GNGEVLIGAS IGVAVAPQDG LDRVELVRKA DIALYDAKRG GRRRHSFYAD TMGERIRDRH EIEAELREAM RTGEGLDIAY QPYFAAKSGL LLGAEALIRW DHPVRGRMLP AQFVPVAEEC GLIETLGEWV LEQACLVAAR WPAGTISVNL SAMQLRNPAL AERVYAILRR TRLSPSRLEL EITETSFVDS SEKCRANLGW LRDIGVRIAL DDFGTGYSSF RHLRGFEVDR IKIDRSFVST IQPGQAGSPV IQAIVDLARL SGLETTAEGV ETEQQRRFLT SIGCDVLQGF LLAEPLGATA VEARFFAELH Q
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