| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_1487 |
|---|
| Symbol | |
|---|
| ID | 5200028 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | - |
|---|
| Start bp | 1643028 |
|---|
| End bp | 1644635 |
|---|
| Gene Length | 1608 bp |
|---|
| Protein Length | 535 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 640581034 |
|---|
| Product | stage II sporulation E family protein |
|---|
| Protein accession | YP_001261988 |
|---|
| Protein GI | 148554406 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG2208] Serine phosphatase RsbU, regulator of sigma subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 34 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACCGAGA TCGAGCGCCG TCGCCGCTTC GGCCTGCGGC CGCAATTGCT GCTGCTGCTG
TTCGTGCTCA ACCTCGTCGC CGCGGTCGCC TATTCGACCA TGCTCTATTC GATCGACCGG
CGGGAGATCA TCAGCGGCAT AGACGACCGG CTGATGACCG CGGTCCATGC GGCGCGCGAG
ATCATCCCGC AGGGCTATCA CCGCCGCATC CAGGGCCCCG ATTCGATCCC GACCGCCGAG
TTCGACCGGC TCCAGGCGCG GCTGTCGCGC TTCTCCAACC GCTCGAACCT CGTCTATGTC
TACAGCTATA TGCGGTTCGG GCCGCACATC TACACGGTGG CGACCAGCGC GACCCAGCGG
GAGATCCGCG AGGGCACCGA GACCGGCTTC TTCACCCGCT ACGACACCGC CCCCGACAAG
CTCTACCGCA GCTTCCAGGA CGGCCGCATC CGCTTCGACG AATATGAGGA CAGCTTCGGC
CGCTTCCGGT CGATCTACAT GCCGGTGCGA TCGCCCGACG GGCGCATCCA CGTCATCGGC
GCCGACATCG CGCTCGATTC GCTCGACCAG CGGCTGGCCG GCGCGCTGCG AACCTCGATC
CTGGTCGGCT TCGCGACCTT CGTCCTGTCG ATGGTGGTCG GGTCGCTGCT GATCACCCGG
ATCACCGGGC CGCTCGAACG GCTGACCTCC TACACCCGCA ACATCGAGGA GCGCAGCTTC
CAGTCGAACG AGGAGGAGAT GCGCGCGATG CAGGCGATCA GCGGCTCGCG CGCCGACGAG
GTGGGCAGCC TGGCCGAGGC GATGTCGGGG ATGATCTCCC GCCTGCAACG CTACCTGATC
GAGATCCAGG CGGCGACGGC GGCGCGCGAG CGGGTCGAGG GCGAGCTGTC GGCCGCGCGC
GACATCCAGA TCGGCATGGT CCCGCGCCGC TTCCCGCCCT TCCCCGAGCG CGACGACATC
GACATCTACG CGCTGCTCGA ACCGGCCAAG GAGGTCGGCG GCGATCTCTA CAACTATGTG
ATGATCGACG AGAACCGGCT GTTCTTCGTG ATCGGCGACG TGTCGGGCAA GGGCGTGCCG
GCGGCCTTGT TCATGGCGAT GACCAGCACC CTGTTCAAGG CGAACGCGCT GTCGGCCGTG
TCGACCGCCG ACCTGATGGC GCGGGTCAAT GCCGAGCTGG CGCGCGACAA TGCCGCCAAC
CTGTTCGTCA CCGCCTTCGC CGGGATCATC GACCTGCGCG ACGGCACCGT CGCCTATAGC
GACGCGGGCC ATGAGGCGCC CTACCTGCTC CGCGCCGACG GCCGCGTGAC CCGGCTCGAC
AAGCCCGAGG GCATGGCGCT CGGCGTGTTC GACGACGTCG CGTTCGACGG CGCGGTCGTG
CGGCTCGACA AGGGCGACGC GCTGGTGCTG TTCACCGACG GCGTGTCGGA GGCGACCCGC
GCCGACGAGG CGCAGTTCAC CGTCGAGGGC ATCGTCGAGA CGCTCGCGGC CCTGCCCGCC
GACCGCACCG CCCGCTCGAT CGCCACCAGC CTCGCCGACC GGGTCGGCGC CTTCGTCGGC
ACCGCGCCGC AGTTCGACGA CATCGCGATC CTGGTGGTCC GGCGCTAG
|
|---|
| Protein sequence | MTEIERRRRF GLRPQLLLLL FVLNLVAAVA YSTMLYSIDR REIISGIDDR LMTAVHAARE
IIPQGYHRRI QGPDSIPTAE FDRLQARLSR FSNRSNLVYV YSYMRFGPHI YTVATSATQR
EIREGTETGF FTRYDTAPDK LYRSFQDGRI RFDEYEDSFG RFRSIYMPVR SPDGRIHVIG
ADIALDSLDQ RLAGALRTSI LVGFATFVLS MVVGSLLITR ITGPLERLTS YTRNIEERSF
QSNEEEMRAM QAISGSRADE VGSLAEAMSG MISRLQRYLI EIQAATAARE RVEGELSAAR
DIQIGMVPRR FPPFPERDDI DIYALLEPAK EVGGDLYNYV MIDENRLFFV IGDVSGKGVP
AALFMAMTST LFKANALSAV STADLMARVN AELARDNAAN LFVTAFAGII DLRDGTVAYS
DAGHEAPYLL RADGRVTRLD KPEGMALGVF DDVAFDGAVV RLDKGDALVL FTDGVSEATR
ADEAQFTVEG IVETLAALPA DRTARSIATS LADRVGAFVG TAPQFDDIAI LVVRR
|
|---|
| |