| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_1476 |
|---|
| Symbol | |
|---|
| ID | 5197226 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | - |
|---|
| Start bp | 1627908 |
|---|
| End bp | 1628810 |
|---|
| Gene Length | 903 bp |
|---|
| Protein Length | 300 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 640581024 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_001261978 |
|---|
| Protein GI | 148554396 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 34 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAGCTTC GCCTGTTGCG CTATTTCACC ACTTTGGCCC GCGAGGGGCA TTTCGCCCGC
GCGGCTGAGG CGTGCGGCGT CACCCAGCCG ACGCTGTCGG CCGGGATCGC CACGCTGGAG
GAGCAGTTCG GCCACCGGCT GGTGCTACGC GAGCGGCGCT ATATCGGGCT CAGCCCCGAA
GGACAGGCGA TGCTGCCCTG GGCGCAGCAG CTCATCGCCG TCTATGACGG CATGGCCCAT
GCGATGGAGG CGATCGACGG CCCGATCCAG GGCGAGTTCC GGCTGGGCGT GATCCCGGCG
GCGATGCCGG CGACCGGCTA TCTGGCGCGG GCGCTGCTCG CCGGGCATCC GGCCTCGACC
CTGTCGGTGC GCTCGCTCAC CTCGCGGGAG ATCGAGCGGG GCCTCGTCGC CTTCGACCTC
GACGCCGGGC TCACCTATCT CGACCATGAG CCGCCGGCCG ACATGCTCGC CGCGCCGCTC
TATGCGGAGC GCTACATCTT CCTCGCCCGC GCCGGCGGCG ACTTCGAGGG GCGAACGTCG
ATCGGCTGGG CCGAGGCGGC CGGCTCCGAC CTCTGCCTGC TCCATCCGGG GATGCAGAAC
CGCCGCATCC TCGACACGCG GCTCGCCGAG CGCGGCCTTG CCATCCGTCC GCGCGCCACC
GCCGACAGCT ATGTCGCGCT GCTGGCGATG GTGCAGGCGG GCGGCTTCGC GACGATCATG
CCCGACAGCT ATCTGGCGCT GCTGCCCGGC ATGAACTGGG CCCGCATCCT GCCGTTCGAC
GATCCCGCCC CGGCCAGCCG GATCGGCGTG ATCGTCCCCA ACCGCCATCC GGTCGGCCCG
CTCGCGGCGG CGGCGCTGGC GGTCGCGCGC GCCGTCGCGC TGCCCGACGG CTTCAAGATT
TGA
|
|---|
| Protein sequence | MQLRLLRYFT TLAREGHFAR AAEACGVTQP TLSAGIATLE EQFGHRLVLR ERRYIGLSPE
GQAMLPWAQQ LIAVYDGMAH AMEAIDGPIQ GEFRLGVIPA AMPATGYLAR ALLAGHPAST
LSVRSLTSRE IERGLVAFDL DAGLTYLDHE PPADMLAAPL YAERYIFLAR AGGDFEGRTS
IGWAEAAGSD LCLLHPGMQN RRILDTRLAE RGLAIRPRAT ADSYVALLAM VQAGGFATIM
PDSYLALLPG MNWARILPFD DPAPASRIGV IVPNRHPVGP LAAAALAVAR AVALPDGFKI
|
|---|
| |