Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swit_1443 |
Symbol | |
ID | 5197503 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingomonas wittichii RW1 |
Kingdom | Bacteria |
Replicon accession | NC_009511 |
Strand | - |
Start bp | 1589046 |
End bp | 1591637 |
Gene Length | 2592 bp |
Protein Length | 863 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 640580990 |
Product | TonB-dependent receptor |
Protein accession | YP_001261945 |
Protein GI | 148554363 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 6 |
Fosmid unclonability p-value | 0.0161464 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGGACAT CGGTATTATT CTGTACAGTG TCTCTCGTCA CGCTGTCCTT TTCGGCCGCC GCCTTGGCCC AGGCCGAGCC CAGGGCCGAG GCCGTGCAGC CGACCTCCGA CGACGCCCAT GCCGACAGGC CCGAACTGGG CGACATCGTC GTCACCGCCC AGAAGCGCGA GCAGTCGCTG GCCAATGTCG GCATGACCAT CCAGGCGGCG AGCGCGGCGA CGCTCAGCGA CCGCGGCGTC CAGGGGCCCG CCGATCTCGT CAAGATCGTG CCGGGCTTCA CCTATACCGA GGGCATCTAC GCGACCCCGG TCTATACGCT GCGCGGGATC GGCCTGTTCG AATCCGCCTT CGGCGGCGCC CCTGCGGTCG CCATCTACAC CGACGAGGTG CCCCGCAACG TCCCGATCAT GTCGGGCGCG CTCGATCTCG ACCTCGAGCG GGTCGAGGTG CTGAAGGGAC CGCAGGGCAC CTTGTTCGGG CAGAGCGCGA CCGGCGGCGC GATCAACTAT ATCGTCGCCA AGCCGACCGA CCATTTCGAA GCCGGCGGCG ATCTGGGCTA TGAACGCTTC GGCAAGATGA GCGCGAGCGG CTTCGTCAGC GGCCCGCTGA CCGACAGCTT CAAGGCCAGG CTGGCGGTCG GCGCGGTCCA GGGCGGCGCC TGGCAACGCA GCATCTCCCG GCCCGACGAC GAGAATGGCG CCACCCGCAG GCTCCAGGGC CGCCTCTCGA TCGACTGGAA GCCGGTCGAC CGGCTGCGGG TGCAGGCGAG CCTGACCGGC GTCCGCGATC GTTCCGATCC GATCGCGTCG CAATATGCCG GCACCAATTT CAACATCTAC AGCGCCTCCG CGCTGGCGGC GGCCAATGCC GACCCGGCGA CGGCCAACCC CTATGGCTAT GTCGACGAGG CGCGCTATGC CGGGATCACC ACCCCGGGCT CGCCGAACTA TGACGCGAGC TTCCTGGGCC GCCAGGCGCT GATCGTCGCG CGGATGAACG GCGTTGCTCC CATCCCGTCG ATCCCCGATC TGGCGGAGGG CTCGCGCGAG CTGCTGGGCA CGCCGCTCGC CACCAATGCG CGCCAGGCGG AATGGACGCC GGGCTTCCTG CGGCGCAACC ATAACGACTA TTATCAGGGG ATCGTCCGGG CGGACTATGA CCTGACCGAC GATATCGCGC TCACCTCGCT CTCGGCGCTC GCCAAGCAGA AGATGAACTA TGTGGCCGAT CTCGATGCGA CCGCCGCGCG CGGCATTGAT TCGATCCTGA CCGGCAATGT CCGCAGCTTC AACCAGGAGC TGAGGCTGGC CGGCAAGACC GACGCCCTCC ACTGGATCGC CGGCGCCACC TACGACAATA TCCGGGCGTC GCAGGGTTTC CTCTACGATT TCGCCCATGG CACGCTCAAT GCGCCGGTCG GCCTGCCGAT CGAATATACT CAGGGCGACA TCCGCACCTC GCAGAAGACC TATGCCGCCT TCGGCAATGT CGAATATGAG GTGGCCGGCA ACCTGACCGT GCAGGCCGGC CTTCGCTATA CGAAGAACAA GCTGACCGGG TCCTATTGCT ATTTCGAGCC GTCCTTCGTC ACCACGCCCA ATTTCACCAC GACCTTCGGC CTGTTGTCCG ACGTGCTGCG CGGGTTGCCG CCCTTCACGA CGCAGGTCCG GCAGGGCGAC TGCCTCCCGC TCGGCGACGG CCAGAACGGC ACGACCCTGA ACGCCCCGCA GATTTCGCGC CTCAACCTGA AGCTGAACCA GGACAACTGG TCGTTCCACC TCGGCGCCAA CTACAAGTTC GACCAGGGCA CGCTGATCTA TGCGACGATC AAGCAGGGCT ACAAGGCCGG CCTGTTCTCG GCGATCGGCG CGACCGTGAC CGACGAATAT GACCCCGCCG TCCAGGAAAA GGTGATCGCC TATGAAGCCG GCTTCAAGGC GCCGCTGCTG AACGGGCGCC TGCGCGTCAA CGGCGCGGCC TTCTATTACG ACTATACCAA CAAGCAGGTC CGCGCCCGGC TGCTGGTGCC GATCTTCGGC CTGCTCGAAA AGCTGGTCAA CGTTCCCAAA TCCTATGTCT GGGGCCTGGA GGGCGAGCTG TTCGCCGAGC CGGTCGACGG CCTGACCCTC AACGGCAGCG CGACCTATCT GAAGTCCAGG GTGTCCGGCA CCTTCCGGAC CACGGCGGAC GGCCTGCCGG TCTACAACAA CCAGGGCTAT ACCGGCGACT TCAAGGGATC GGCGCTGCCG TTCACGCCGA AGTTCAGCGC CAATGCCGAC GTCCAGTATG AATGGACGGC GGGCGGCCTG AAGCCGTTCG TCGGCGCCGG CATCCGCTAT CAGGGCGGAT CGAACGCGAC CTTCGAGAAC CGCATCCTGC TGGCCGGCGA TTTCAGGATC CCCGGCTATG AGACGGTCGA CGTCCGGCTG GGCCTGGGCG CCGAGGACGA CAGCTGGAAG CTGACCGCTT TCGGCCGGAA CGTCTTCAAC AAATATTATG TCGTCGCGAG GAATATCGGG CTCGATACCA ACTTCCAGAC GGCGGGCGCC CCGGCGACCT ATGGCGTGAT GCTGCGGGTT CGCATTCGGT GA
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Protein sequence | MRTSVLFCTV SLVTLSFSAA ALAQAEPRAE AVQPTSDDAH ADRPELGDIV VTAQKREQSL ANVGMTIQAA SAATLSDRGV QGPADLVKIV PGFTYTEGIY ATPVYTLRGI GLFESAFGGA PAVAIYTDEV PRNVPIMSGA LDLDLERVEV LKGPQGTLFG QSATGGAINY IVAKPTDHFE AGGDLGYERF GKMSASGFVS GPLTDSFKAR LAVGAVQGGA WQRSISRPDD ENGATRRLQG RLSIDWKPVD RLRVQASLTG VRDRSDPIAS QYAGTNFNIY SASALAAANA DPATANPYGY VDEARYAGIT TPGSPNYDAS FLGRQALIVA RMNGVAPIPS IPDLAEGSRE LLGTPLATNA RQAEWTPGFL RRNHNDYYQG IVRADYDLTD DIALTSLSAL AKQKMNYVAD LDATAARGID SILTGNVRSF NQELRLAGKT DALHWIAGAT YDNIRASQGF LYDFAHGTLN APVGLPIEYT QGDIRTSQKT YAAFGNVEYE VAGNLTVQAG LRYTKNKLTG SYCYFEPSFV TTPNFTTTFG LLSDVLRGLP PFTTQVRQGD CLPLGDGQNG TTLNAPQISR LNLKLNQDNW SFHLGANYKF DQGTLIYATI KQGYKAGLFS AIGATVTDEY DPAVQEKVIA YEAGFKAPLL NGRLRVNGAA FYYDYTNKQV RARLLVPIFG LLEKLVNVPK SYVWGLEGEL FAEPVDGLTL NGSATYLKSR VSGTFRTTAD GLPVYNNQGY TGDFKGSALP FTPKFSANAD VQYEWTAGGL KPFVGAGIRY QGGSNATFEN RILLAGDFRI PGYETVDVRL GLGAEDDSWK LTAFGRNVFN KYYVVARNIG LDTNFQTAGA PATYGVMLRV RIR
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