Gene Swit_1443 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwit_1443 
Symbol 
ID5197503 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSphingomonas wittichii RW1 
KingdomBacteria 
Replicon accessionNC_009511 
Strand
Start bp1589046 
End bp1591637 
Gene Length2592 bp 
Protein Length863 aa 
Translation table11 
GC content66% 
IMG OID640580990 
ProductTonB-dependent receptor 
Protein accessionYP_001261945 
Protein GI148554363 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG1629] Outer membrane receptor proteins, mostly Fe transport 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0161464 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGGACAT CGGTATTATT CTGTACAGTG TCTCTCGTCA CGCTGTCCTT TTCGGCCGCC 
GCCTTGGCCC AGGCCGAGCC CAGGGCCGAG GCCGTGCAGC CGACCTCCGA CGACGCCCAT
GCCGACAGGC CCGAACTGGG CGACATCGTC GTCACCGCCC AGAAGCGCGA GCAGTCGCTG
GCCAATGTCG GCATGACCAT CCAGGCGGCG AGCGCGGCGA CGCTCAGCGA CCGCGGCGTC
CAGGGGCCCG CCGATCTCGT CAAGATCGTG CCGGGCTTCA CCTATACCGA GGGCATCTAC
GCGACCCCGG TCTATACGCT GCGCGGGATC GGCCTGTTCG AATCCGCCTT CGGCGGCGCC
CCTGCGGTCG CCATCTACAC CGACGAGGTG CCCCGCAACG TCCCGATCAT GTCGGGCGCG
CTCGATCTCG ACCTCGAGCG GGTCGAGGTG CTGAAGGGAC CGCAGGGCAC CTTGTTCGGG
CAGAGCGCGA CCGGCGGCGC GATCAACTAT ATCGTCGCCA AGCCGACCGA CCATTTCGAA
GCCGGCGGCG ATCTGGGCTA TGAACGCTTC GGCAAGATGA GCGCGAGCGG CTTCGTCAGC
GGCCCGCTGA CCGACAGCTT CAAGGCCAGG CTGGCGGTCG GCGCGGTCCA GGGCGGCGCC
TGGCAACGCA GCATCTCCCG GCCCGACGAC GAGAATGGCG CCACCCGCAG GCTCCAGGGC
CGCCTCTCGA TCGACTGGAA GCCGGTCGAC CGGCTGCGGG TGCAGGCGAG CCTGACCGGC
GTCCGCGATC GTTCCGATCC GATCGCGTCG CAATATGCCG GCACCAATTT CAACATCTAC
AGCGCCTCCG CGCTGGCGGC GGCCAATGCC GACCCGGCGA CGGCCAACCC CTATGGCTAT
GTCGACGAGG CGCGCTATGC CGGGATCACC ACCCCGGGCT CGCCGAACTA TGACGCGAGC
TTCCTGGGCC GCCAGGCGCT GATCGTCGCG CGGATGAACG GCGTTGCTCC CATCCCGTCG
ATCCCCGATC TGGCGGAGGG CTCGCGCGAG CTGCTGGGCA CGCCGCTCGC CACCAATGCG
CGCCAGGCGG AATGGACGCC GGGCTTCCTG CGGCGCAACC ATAACGACTA TTATCAGGGG
ATCGTCCGGG CGGACTATGA CCTGACCGAC GATATCGCGC TCACCTCGCT CTCGGCGCTC
GCCAAGCAGA AGATGAACTA TGTGGCCGAT CTCGATGCGA CCGCCGCGCG CGGCATTGAT
TCGATCCTGA CCGGCAATGT CCGCAGCTTC AACCAGGAGC TGAGGCTGGC CGGCAAGACC
GACGCCCTCC ACTGGATCGC CGGCGCCACC TACGACAATA TCCGGGCGTC GCAGGGTTTC
CTCTACGATT TCGCCCATGG CACGCTCAAT GCGCCGGTCG GCCTGCCGAT CGAATATACT
CAGGGCGACA TCCGCACCTC GCAGAAGACC TATGCCGCCT TCGGCAATGT CGAATATGAG
GTGGCCGGCA ACCTGACCGT GCAGGCCGGC CTTCGCTATA CGAAGAACAA GCTGACCGGG
TCCTATTGCT ATTTCGAGCC GTCCTTCGTC ACCACGCCCA ATTTCACCAC GACCTTCGGC
CTGTTGTCCG ACGTGCTGCG CGGGTTGCCG CCCTTCACGA CGCAGGTCCG GCAGGGCGAC
TGCCTCCCGC TCGGCGACGG CCAGAACGGC ACGACCCTGA ACGCCCCGCA GATTTCGCGC
CTCAACCTGA AGCTGAACCA GGACAACTGG TCGTTCCACC TCGGCGCCAA CTACAAGTTC
GACCAGGGCA CGCTGATCTA TGCGACGATC AAGCAGGGCT ACAAGGCCGG CCTGTTCTCG
GCGATCGGCG CGACCGTGAC CGACGAATAT GACCCCGCCG TCCAGGAAAA GGTGATCGCC
TATGAAGCCG GCTTCAAGGC GCCGCTGCTG AACGGGCGCC TGCGCGTCAA CGGCGCGGCC
TTCTATTACG ACTATACCAA CAAGCAGGTC CGCGCCCGGC TGCTGGTGCC GATCTTCGGC
CTGCTCGAAA AGCTGGTCAA CGTTCCCAAA TCCTATGTCT GGGGCCTGGA GGGCGAGCTG
TTCGCCGAGC CGGTCGACGG CCTGACCCTC AACGGCAGCG CGACCTATCT GAAGTCCAGG
GTGTCCGGCA CCTTCCGGAC CACGGCGGAC GGCCTGCCGG TCTACAACAA CCAGGGCTAT
ACCGGCGACT TCAAGGGATC GGCGCTGCCG TTCACGCCGA AGTTCAGCGC CAATGCCGAC
GTCCAGTATG AATGGACGGC GGGCGGCCTG AAGCCGTTCG TCGGCGCCGG CATCCGCTAT
CAGGGCGGAT CGAACGCGAC CTTCGAGAAC CGCATCCTGC TGGCCGGCGA TTTCAGGATC
CCCGGCTATG AGACGGTCGA CGTCCGGCTG GGCCTGGGCG CCGAGGACGA CAGCTGGAAG
CTGACCGCTT TCGGCCGGAA CGTCTTCAAC AAATATTATG TCGTCGCGAG GAATATCGGG
CTCGATACCA ACTTCCAGAC GGCGGGCGCC CCGGCGACCT ATGGCGTGAT GCTGCGGGTT
CGCATTCGGT GA
 
Protein sequence
MRTSVLFCTV SLVTLSFSAA ALAQAEPRAE AVQPTSDDAH ADRPELGDIV VTAQKREQSL 
ANVGMTIQAA SAATLSDRGV QGPADLVKIV PGFTYTEGIY ATPVYTLRGI GLFESAFGGA
PAVAIYTDEV PRNVPIMSGA LDLDLERVEV LKGPQGTLFG QSATGGAINY IVAKPTDHFE
AGGDLGYERF GKMSASGFVS GPLTDSFKAR LAVGAVQGGA WQRSISRPDD ENGATRRLQG
RLSIDWKPVD RLRVQASLTG VRDRSDPIAS QYAGTNFNIY SASALAAANA DPATANPYGY
VDEARYAGIT TPGSPNYDAS FLGRQALIVA RMNGVAPIPS IPDLAEGSRE LLGTPLATNA
RQAEWTPGFL RRNHNDYYQG IVRADYDLTD DIALTSLSAL AKQKMNYVAD LDATAARGID
SILTGNVRSF NQELRLAGKT DALHWIAGAT YDNIRASQGF LYDFAHGTLN APVGLPIEYT
QGDIRTSQKT YAAFGNVEYE VAGNLTVQAG LRYTKNKLTG SYCYFEPSFV TTPNFTTTFG
LLSDVLRGLP PFTTQVRQGD CLPLGDGQNG TTLNAPQISR LNLKLNQDNW SFHLGANYKF
DQGTLIYATI KQGYKAGLFS AIGATVTDEY DPAVQEKVIA YEAGFKAPLL NGRLRVNGAA
FYYDYTNKQV RARLLVPIFG LLEKLVNVPK SYVWGLEGEL FAEPVDGLTL NGSATYLKSR
VSGTFRTTAD GLPVYNNQGY TGDFKGSALP FTPKFSANAD VQYEWTAGGL KPFVGAGIRY
QGGSNATFEN RILLAGDFRI PGYETVDVRL GLGAEDDSWK LTAFGRNVFN KYYVVARNIG
LDTNFQTAGA PATYGVMLRV RIR