| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_1380 |
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| Symbol | |
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| ID | 5198827 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009511 |
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| Strand | + |
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| Start bp | 1521847 |
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| End bp | 1524660 |
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| Gene Length | 2814 bp |
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| Protein Length | 937 aa |
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| Translation table | 11 |
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| GC content | 74% |
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| IMG OID | 640580926 |
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| Product | tetratricopeptide TPR_4 |
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| Protein accession | YP_001261882 |
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| Protein GI | 148554300 |
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| COG category | [S] Function unknown |
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| COG ID | [COG4995] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.0840976 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCGTCGC CGGCGGTCGA GGCCGCCAGG GCCGATCCGG TGGCCGCCGC CGCGAAGATC
GACATATCCG CCGATCCGGG CGGCGCCGTC GTCGCCTGGC GCGCCGCGCT CGCGACCGCG
TCGAGGCCGG GCGCACGGCG GGCCCATATC CTCAGCAGGC TCGGCACCGC GATGGTCGGG
GCGGCGCAGG TCGAGGACGC CGTGCCGATC CTGCGCGAAT CGCGCGACAT GGCGGGCGTC
TCGCCGTCCG ACCGGGCGCA CAGCACGACG CTGCTCGGCT CCGCCTTCAC CAACCTCAAC
CGCTATGACG AGGCGGAGGC GACGCTGAAG GACGCCGTGG CGCAATGGCA TGCGATCGCG
CCGCAGGGCA GCGCCGAGGA GGCCGACGCG ATCCACACGC TCGCGATCCT CCATTATGCG
CGCGGCGATC TCGACGGCGC CGAGCGGCTC GAAGCCGAAT CCTTCGCGCT CGCGCGCCGG
GTGAAGGCGC CCGAGAACGA GCATATGGTG GCGATGATCA CCACCATGGC GATCGTCGCG
CTCCAGGCCG GCAAGCTGGA GGCGAGCGAC ACCTATGCGC GCGAGGCGAT GACGATCGCG
GGACGCGTCC TGGCCGAGGA TCATCCGATC GCGATCCTCG CGATCAACAA TTGGGTCACC
GTGCTCGCCG CGCAGAACCG CCGTTCCGAG GCGGTCGACA TCCTGCGGCG GATCGCCGGC
ATCGAGGAGA AGCGCTTCGG CCCCGACTAT GCGGGGCTGG CCGTCACCTA CAATAATCTC
GGCCGCACCC TCGCCCTGCT CGGCCGCGCC GCCGAGGCCG AGCCCTATGC CCGCCGGTCG
GTGGCGATCG GAGAGAAGAC GCTGGCCCGC GACGACGAGA CGCTCGCCGC CTTCCGCAAC
AATCTCGCCG ATCTGCTCGC CGGGCGCGGC CTGCTGGCGG AGTCGCTGGC GATCCGGCGC
CAGGCGCTCG CCGATCTCGG CGATTCCAAT CCGGTGCGGG CGATGCGCAT CCGCACCTCG
CTGGGCAAGA GCCTGTTGTC GACCGGCGAC GATGCCGGCG CGTGGGAGGC GTTCGCGATC
GTCGACGCGT GGCAGGCGAA GACCCTGCCC GAGACGCACC CCGACCGCAT CGACATCGCC
GGCTGCCGCG CGCTGCTCGC CGCCCGGATG AAACGCGCCG ATGCGGCCGA GCGGCTCGCC
GGCATCCTCG CCGTCACCGA GCGCGAGCTG TTCGCCAACG CCGATCCCGA CCGGCGCAGC
AGCACCGTGC CCGATCATCT CGGCCGGTTG CTGGAGGCGA GCTGGCTGGT CGGCGATCGG
CCGGCGGGCT TCCGCGTCGC CCAGCTGATG GCGCTCGACG ATGCCGGCCG CGCGATCGTC
GCCGTCTCGG CGCGCGCCGC CGCGCGCGAC GGCGGCACCG CCGCGCTGAT CCGCAAGCGG
CAGGACCTGC TCGCCCAGCG CGACCGGCTG ACCCAGGCGG CGCTGCGCGC CTATGGCAAG
GGCGAGGCCG ACTATCACGA CGCCACCGCC GAAGTCGGCC AGGTCGACCG CGAACTGGCC
GCGACCGAAG CGGCGCTCGC CGCCGCCCAG CCCGATTATG CCGCCCTCAC CCGCTTCACC
GCGCTGGACG AAGCGGCGGT GGCACGGCGG CTCGGCCGCC GCCAGGCGCT GGTGATGCCG
GTGCCCTTCG GCGGCGGCGC GCTGACCTTC GTGGTCCGGT CCGGCGGCGG CGCATGGGCC
TGGTCCGGCA CGGACTCGAC CGCGCTCGCC GATGCCGCGA CGTTGCGCGC CTCGCTGGGG
CTGGAGGTCG CGACGCGAGG CGCGCTCGCC GACGCGCCGA CGGACCGGCC GCGCTTCGAC
CGGGCGCTCG CCCACAGGCT CTACCGCGAG ATCGTGCCCG CCGCGCTCGA CGCGACGCTG
GCCGGGGCCG ACGACTGGAT TCTCGCCCCG GGCGGCGCCT TCACCCGGCT GCCCTTCGCG
GTGCTGGTGA CCGACACGCC CAAGGGCCGC GACGACGACC CCGCCGCCTT GCGCGCCACC
CCCTGGCTGA TCCGCAGGGC CGCGCTGATG CAGGTCCCCT CGATCGCCGG GATCGGGGAG
ACGCGCGGCG CGACGACATC CGGCGATCGC TTCGTCGGCA TCGGCGCGCC GCTGCTCGGC
GGCAAGGCCG CGCCCGGTGA ACTGCGCGGC TTCTATCGCG GCGGCGCGGT CGACCGCGAC
GCCCTAGCCG CGCTCGCTCC CCTGCCGCAG GCCGAACGCG AGCTGATCCG GATGCGGGAG
GCGCTCGGCC TCCAGCCGAG CCTGCTGGTC GGCGCCGCTG CGACCGAACG CGCGGTCAAG
GCCGAGGATT TCAAGCGGGT CCGCGTCCTC GCCTTCGCCA CCCATGGGCT GGTCGGCGGC
GCGGTCGACA AGGCTTCGGA ACCAGGTCTC GTCCTCACGC CGCCGGCGAA ACCGGACGAT
ACCGACGACG GCCTGCTCAC CGCGTCCGAG ATCGCCGCGC TCGACATCGA CGCCGACTGG
GTGGTGCTGT CGGCCTGCGA CACGGCGGCG GGCCAAAGCC CCACCGCCCC TGCCCTGTCG
GGTCTCGCCC GCGCCTTCCT CTATGCCGGG GCGCGATCGC TGCTGGTCAG CCACTGGGCG
GTGCGCGACG ACGTCGCCGC GCGGCTGACC GTCGACACCG CCTCGCGCGC CGCGAAGGGC
GAGCCCCGGC CGCAGGCGCT GCGCAGGGCA ATGCTGCGGC TGATCGCCGA CCCGAAGGTG
ACGGACGGCG CCGTTCCCTC GGTCTGGGCC CCCTTCATCC TGGTCGCGCG CTGA
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| Protein sequence | MSSPAVEAAR ADPVAAAAKI DISADPGGAV VAWRAALATA SRPGARRAHI LSRLGTAMVG
AAQVEDAVPI LRESRDMAGV SPSDRAHSTT LLGSAFTNLN RYDEAEATLK DAVAQWHAIA
PQGSAEEADA IHTLAILHYA RGDLDGAERL EAESFALARR VKAPENEHMV AMITTMAIVA
LQAGKLEASD TYAREAMTIA GRVLAEDHPI AILAINNWVT VLAAQNRRSE AVDILRRIAG
IEEKRFGPDY AGLAVTYNNL GRTLALLGRA AEAEPYARRS VAIGEKTLAR DDETLAAFRN
NLADLLAGRG LLAESLAIRR QALADLGDSN PVRAMRIRTS LGKSLLSTGD DAGAWEAFAI
VDAWQAKTLP ETHPDRIDIA GCRALLAARM KRADAAERLA GILAVTEREL FANADPDRRS
STVPDHLGRL LEASWLVGDR PAGFRVAQLM ALDDAGRAIV AVSARAAARD GGTAALIRKR
QDLLAQRDRL TQAALRAYGK GEADYHDATA EVGQVDRELA ATEAALAAAQ PDYAALTRFT
ALDEAAVARR LGRRQALVMP VPFGGGALTF VVRSGGGAWA WSGTDSTALA DAATLRASLG
LEVATRGALA DAPTDRPRFD RALAHRLYRE IVPAALDATL AGADDWILAP GGAFTRLPFA
VLVTDTPKGR DDDPAALRAT PWLIRRAALM QVPSIAGIGE TRGATTSGDR FVGIGAPLLG
GKAAPGELRG FYRGGAVDRD ALAALAPLPQ AERELIRMRE ALGLQPSLLV GAAATERAVK
AEDFKRVRVL AFATHGLVGG AVDKASEPGL VLTPPAKPDD TDDGLLTASE IAALDIDADW
VVLSACDTAA GQSPTAPALS GLARAFLYAG ARSLLVSHWA VRDDVAARLT VDTASRAAKG
EPRPQALRRA MLRLIADPKV TDGAVPSVWA PFILVAR
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