Gene Swit_1358 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwit_1358 
SymbolrpsL 
ID5200807 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSphingomonas wittichii RW1 
KingdomBacteria 
Replicon accessionNC_009511 
Strand
Start bp1505708 
End bp1506079 
Gene Length372 bp 
Protein Length123 aa 
Translation table11 
GC content64% 
IMG OID640580905 
Product30S ribosomal protein S12 
Protein accessionYP_001261861 
Protein GI148554279 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0048] Ribosomal protein S12 
TIGRFAM ID[TIGR00981] ribosomal protein S12, bacterial/organelle 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value0.179796 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.150246 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCGACGA TCAACCAGCT GATCCGCAAG GGTCGCGAAC CGCAGAAGGC CAAGTCGAAG 
GTCCCTGCGA TGGAAAAGAA CCCGCAGAAG CGCGGCGTTT GCACGCGCGT CTACACGACG
ACCCCGAAGA AGCCGAACTC GGCGCTGCGC AAGGTGGCCA AGGTCCGCCT GACCAACAGC
CGCGAAGTGA TCAGCTACAT TCCGGGCGAA GGCCACAACC TCCAGGAGCA CTCGGTGGTC
CTGATCCGCG GCGGCCGTGT GCGCGACCTT CCGGGCGTGC GCTATCACGT TCTCCGCGGC
GTGCTCGACA CGCAGGGTGT CAAGGATCGC AAGCAGAGCC GTTCGAAGTA CGGCGCCAAG
CGTCCCAAGT AA
 
Protein sequence
MPTINQLIRK GREPQKAKSK VPAMEKNPQK RGVCTRVYTT TPKKPNSALR KVAKVRLTNS 
REVISYIPGE GHNLQEHSVV LIRGGRVRDL PGVRYHVLRG VLDTQGVKDR KQSRSKYGAK
RPK