| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_1316 |
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| Symbol | |
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| ID | 5200628 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009511 |
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| Strand | + |
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| Start bp | 1472210 |
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| End bp | 1475224 |
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| Gene Length | 3015 bp |
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| Protein Length | 1004 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 640580863 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_001261819 |
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| Protein GI | 148554237 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain
[COG3292] Predicted periplasmic ligand-binding sensor domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.730261 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTGGCCA TGTGCGCGCT CGCCTTCGCG GCCGCCGGCC CGGTTCGCGC CGCGCCGCGC
TGGACCAACC TGGTCACCAC CGTCTTCCAC AATTACGGCC GCGACCAGGG ATTGCCGCAT
CCGGTGCCGA CCGCGCTAGC GCAGGATCGC GACGGCTTCA TCTGGATCGG CACCCAGGGC
GGGCTCACCC GCTGGGACGG CTATCGCTTC CGCGCCTACA AGGCCGATCC CGACGTTCCG
GGTAGCCTGC CCGACGACTG GGTCCAGATC CTGCACGTCG ATCCGGCGGG CACGCTGTGG
ATCGGCGGCG GCGCCGGCGG CCTCGCCCGC TATGACGCGC CGCGCGACCG TTTCGTGCGG
GTGCCGCTCG GCCCCAGCGG GGGACGGACG CATATCGGCG CGATCGCCGA CGACGGTCGC
GGCGGGCTGT GGGTCGGGAC CGACCAGGGA CTCCATCATC TGAACCCGGC CAATGGCGCG
GTCCGGACGA CGCCGATCGC GATCGCCGAC GCCCCGGTTC GCGCGCTGCT GCGCGACCGG
AGCGGCGCGC TATGGGTCGG GACGAGCAAG GGACTGCTGC GCCGCGCGCC CGGCTCCGCC
GGCTGGACGA TCGTCGCGCT CGACCATGCG GCGGTCAGCA TTACCGCGCT CTACGAGGAT
GTCGAGGGCC GGGTGTGGAT CGGGACCCAG CGGCGCGGGC TGCTGCTGAT CGACCGGCCG
GGCGCGCGGC CCCGCGCAGT CGGCGAGGGC CCCATATTGT CGGCGGGATC GGTGTCCGCG
ATCAGCCCCG CCAGCCCGCG CGAGCTATGG GTCGGGATGC GCGGCAACGG TGTCGTCGCG
ATCGACGTCG CGACGCTGCA ACCGCGTTTC ATCCGGCACG ACCGCACGGT GGCCAACAGC
CTCGCCCATG ACGACGTCTG GGCGCTGCTG CGCGACAAGG CCGGATCGCT GTGGGTCGGC
TGCATGGGCG GGCTCAGCTA CCATCCGCGC ACCTCGGGGC TGATATCGGC CATGCTCGCC
TCGGAGAACA GCGTCGACGG GCTCAGCGCG ACCGATCCGC AATCGGTGCT GGCGACCCGC
GACGGCCGGG TATGGATGGG CTATCTGGAC GGCGGCGTCG ACGTGATCGA TCCGGCGGTC
GGCCGTGTCG CGGCGCTGCG GCCCGGCGAC AGCGGCGGCC ATCGCACGAT CCTGCCGCCC
GACATCGTCT TCGCCCTGGC CGAGGATCGA TGGGGCGGCG TCTATATCGG CACGCGGCGC
GGCCTCTACC ACAGCGGTCC CGCCGCCGAC GGCGTCCGCC TGGTCCCGTT GCCGGGCCGC
GACCCGCAGA TGTCGGTCAC GGCGCTGGCC TTCGACGACG GCGTGCTCTG GGTCGGCGGC
GACGAGGACG GGCTGCTCGG CGTGGTCCCC GATCGGGCGG GACAGCCGGG CCGCGTCCTG
TTCGGGCCGA AGGACAATGC CCGCCTGACC GACGACGGCG TCAACGTCAT CCGGCGCGGC
CTGGGGCACG ACCTGTGGAT CGGGACGCGC AACGGGCTCT ACCGGCTCGA CCTGGCGACC
CACGCGATCG ACCATATCGC CTTCGACGCC ACCGACCGCG GCGCCCTGCC CGGACGGAAT
GTGGTGGCGA TGCTGATCGA CCGGCGCAAC CGCCTCTGGG TCGGCACCTT CGGCGGCGGC
CTCGCCATGA TGACCGGCCG CGACGCCGCC GGCCGCTGGC GCTTCCACCG CATCGGGGTG
GCGCAGGGGC TGCCGCACAT GAACGTCGAC AGCCTGCAGA TGGACGGGTC GGGCACGATC
TGGGCCGGTA CCGACGACGG CCTCGCCCGG GTCGATCCGA CGAGCTTCGC GGTCCGCGCC
GTGCGCCAGG CCGACGGCTC CGCGCTGGTC GACTATTATG CCGGGGCCGG CGCCACCAGC
GCGGTCGGCG AGGCGCTGTT CGGCGCCAAG GGCGGCCTCA CCATCGTCCG GCCGGGGCCC
CTGCCCCGCT GGACGCTGCA ACCGCCGCTG GTGGTGACCG ACCTCAGGAT CGGCGGCGTG
ACGCTGCCGG TGGCGCAGGT CAACCAGGCG ACCGCGACCG CCCCGCTGAC GGTGCCGCCC
GACGCCAACA GCCTGGCGGT CGAGTTCGCC GCGCTCGACT ATACCGCGCC CGAACGCAAC
CATTATGCCT ATCGCCTCGA CGGCTTCGAC CGCGACTGGA CCGAGACCGA CGCCAACCGG
CGGCTCGCCA TCTACACCAA TCTGCCGCCC GGCAATTACG TCCTGCGCCT GCGCGGCTCC
AACCGGGCCG GCGTGTGGAC CGAGCGCGAA CGGACCCTGC CGATCCGGGT GCTGCCCGCC
TGGTATCAGC GGCTGTGGCT GAAGCTGGTC GGCGGCGTGC TGCTGCTGCT CGGCGTCGCG
ATGATCGTCC GGTGGCGGAC CCGCTATCTG CGCCGCCGGC AGGCCGATCT CGAACGCCAG
ATCGCCGAGC GCACCGCCGA CCTGCGCGCC GCCAACGAAC GGCTGGGCCA TCTGGCGCTG
ACCGATCCGC TGACCGGCTG CGCCAACCGG CGCCATTTCC TGGCGCTGGC CGAGGACCAG
ATCGGCGCGG CGCGGCGCGG CGGCCGACCG CTGTGCCTGG CGATCCTCGA CCTCGACGAG
TTCAAGGCGG TCAACGACCG CCACGGCCAT CCGGGCGGCG ATGCGGTGCT GGAGATGGCG
GGCATCCTCC TGCTCGACCA TCTGCGCGAG GGCGACGCCG CCGGGCGGAT CGGCGGCGAG
GAGTTCGCCA TATTGATGCC CAACACCGCG ATCGCCGACG CCCGGCTGTT CGCGGACCGG
CTGCGCGAGG CGATCGCCAC CGCCCGGATC ACGGTCGACG GCCTGTCGAT CGGAGTATCG
GTCAGCATGG GCGTGGCCGA GCTGTGCGAC GACGAGGATT TCGGACGCCT CTACGCGCGC
GCCGACACCG GACTCTATGC CGCGAAGCAG GCCGGCCGGA ACCGGGTAGA GACGGTCGTC
GCTCCGGCGA GTTGA
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| Protein sequence | MLAMCALAFA AAGPVRAAPR WTNLVTTVFH NYGRDQGLPH PVPTALAQDR DGFIWIGTQG
GLTRWDGYRF RAYKADPDVP GSLPDDWVQI LHVDPAGTLW IGGGAGGLAR YDAPRDRFVR
VPLGPSGGRT HIGAIADDGR GGLWVGTDQG LHHLNPANGA VRTTPIAIAD APVRALLRDR
SGALWVGTSK GLLRRAPGSA GWTIVALDHA AVSITALYED VEGRVWIGTQ RRGLLLIDRP
GARPRAVGEG PILSAGSVSA ISPASPRELW VGMRGNGVVA IDVATLQPRF IRHDRTVANS
LAHDDVWALL RDKAGSLWVG CMGGLSYHPR TSGLISAMLA SENSVDGLSA TDPQSVLATR
DGRVWMGYLD GGVDVIDPAV GRVAALRPGD SGGHRTILPP DIVFALAEDR WGGVYIGTRR
GLYHSGPAAD GVRLVPLPGR DPQMSVTALA FDDGVLWVGG DEDGLLGVVP DRAGQPGRVL
FGPKDNARLT DDGVNVIRRG LGHDLWIGTR NGLYRLDLAT HAIDHIAFDA TDRGALPGRN
VVAMLIDRRN RLWVGTFGGG LAMMTGRDAA GRWRFHRIGV AQGLPHMNVD SLQMDGSGTI
WAGTDDGLAR VDPTSFAVRA VRQADGSALV DYYAGAGATS AVGEALFGAK GGLTIVRPGP
LPRWTLQPPL VVTDLRIGGV TLPVAQVNQA TATAPLTVPP DANSLAVEFA ALDYTAPERN
HYAYRLDGFD RDWTETDANR RLAIYTNLPP GNYVLRLRGS NRAGVWTERE RTLPIRVLPA
WYQRLWLKLV GGVLLLLGVA MIVRWRTRYL RRRQADLERQ IAERTADLRA ANERLGHLAL
TDPLTGCANR RHFLALAEDQ IGAARRGGRP LCLAILDLDE FKAVNDRHGH PGGDAVLEMA
GILLLDHLRE GDAAGRIGGE EFAILMPNTA IADARLFADR LREAIATARI TVDGLSIGVS
VSMGVAELCD DEDFGRLYAR ADTGLYAAKQ AGRNRVETVV APAS
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