| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_1310 |
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| Symbol | sdhA |
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| ID | 5200435 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009511 |
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| Strand | - |
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| Start bp | 1466149 |
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| End bp | 1467936 |
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| Gene Length | 1788 bp |
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| Protein Length | 595 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 640580857 |
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| Product | succinate dehydrogenase flavoprotein subunit |
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| Protein accession | YP_001261813 |
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| Protein GI | 148554231 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1053] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit |
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| TIGRFAM ID | [TIGR01812] succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup
[TIGR01816] succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 0.194206 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCGAGG CATATAAGAT CGTCGACCAC CTCTATGACG CGGTGGTCGT GGGCGCGGGC
GGCTCCGGCC TTCGCGCCAC CATGGGCGCG GCGGGCGCCG GCCTCAAGAC GGCCTGCATC
ACCAAGGTGT TCCCGACCCG CAGCCACACC GTCGCGGCGC AGGGCGGCAT CGCCGCCTCG
CTCGGCAATA TGGGCCCGGA TCACTGGACC TGGCACATGT ACGACACCGT CAAGGGGTCG
GACTGGCTCG GCGACCAGGA CGCCATCGAA TATATGGTGC GCGAGGCGCC GGCCGCGGTG
ATCGAGCTCG AACATGCGGG CGTGCCGTTC AGCCGCACCG AAGAGGGCAA GATCTACCAG
CGCCCGTTCG GCGGCCACAT GCAGAACATG GGCGCCGGCC CGCCCGTGCA GCGCACCTGC
GCCGCCGCGG ACCGCACCGG CCACGCGATG CTTCACGCGC TCTATCAGCA GAGCCTGAAG
TACGATGCCG ACTTCTACAT CGAATATTTC GCGCTCGACC TGATCATGGA GGACGGCGCG
TGCAAGGGCG TGATCGCGCT CTGCATGGAG GACGGCTCGA TCCATCGCTT CCGCAGCCAG
GCGGTGGTGC TGGCGACGGG CGGTTCGGGC CGCACCTATT TCTCCGCGAC GTCGGCGCAC
ACCTGCACCG GCGACGGCGG CGGCATGGTG CTGCGCGCCG GCCTGCCGCT CCAGGACATG
GAGTTCGTGC AGTTCCACCC GACCGGCATC TACGGCGCGG GCGTCCTCAT CACCGAGGGC
GCGCGCGGCG AGGGCGGCTA TCTCACCAAC TCGCAGGGCG AGCGCTTCAT GGAGCGCTAT
GCCCCGTCGG CGAAGGACCT CGCCAGCCGC GACGTCGTGT CGCGTTCGAT GGCGATGGAG
ATGCGCGAGG GCCGCGGCGT CGGCAAGAAC GGCGACTATA TCTACCTGCA CCTCGATCAT
ATCGATCCCA AGGTGCTGGC GGAGCGGCTG CCCGGCATCA CCGAGACCGG CAAGATCTTC
GCCGGCGTCG ACCTGACCCG CCAGCCGCTG CCGGTGACGC CGACCGTCCA CTACAATATG
GGCGGCGTCC CCTGTAACTA TCATGGCGAG GTCGTCACCC TGAAGGACGG CAACCCGGAC
GCAGTCGTCC CCGGCCTGTT CGCGGTGGGC GAGGCGGCCT GCGTGTCGGT CCACGGCGCC
AACCGCCTCG GCTCCAACTC GCTGATCGAC CTCGTCGTGT TCGGCCGCGC GACCGGCTTC
CGTCTGGCGG AGCTGGTCAA GCCGAACAGC AAGCATGGCG GGATCAACAA GGAAGCCGAC
GAGAAGGCGC TCGGCCGGCT CGACCATTAC CGCAACGCCA AGGGCGGCAC CCCGACCGCG
CAGATCCGCC TCGACATGCA GCACACGATG CAGAAGCACT GCGCCGTGTT CCGCGATTCC
GAGCTGCTCG GCGAAGGCCA GGGGAAGATC GACAAGGTCT ATACCCGCCT CGACGATATC
GGCATCACCG ACCGGTCGCT GATCTTCAAC ACGGACCTGA TCGAGACGCT CGAGCTCGAC
AACATGCTGC CGCAGGCGGT GGTGACGATG CATTCGGCGG CGAACCGCAA GGAAAGCCGC
GGCGCGCACA TGCACGAGGA TTATCCCGAT CGCGACGATG CGAACTGGAT GAAGCACACC
ATCACCTGGT TCGACAAGGG CGAGGTGAAG ATCGATTATC GCCCGGTGCA CGATTACACG
CTCACCGACG ACGTCGAATA TATCAAGCCG AAGGCGCGCG TTTACTGA
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| Protein sequence | MSEAYKIVDH LYDAVVVGAG GSGLRATMGA AGAGLKTACI TKVFPTRSHT VAAQGGIAAS
LGNMGPDHWT WHMYDTVKGS DWLGDQDAIE YMVREAPAAV IELEHAGVPF SRTEEGKIYQ
RPFGGHMQNM GAGPPVQRTC AAADRTGHAM LHALYQQSLK YDADFYIEYF ALDLIMEDGA
CKGVIALCME DGSIHRFRSQ AVVLATGGSG RTYFSATSAH TCTGDGGGMV LRAGLPLQDM
EFVQFHPTGI YGAGVLITEG ARGEGGYLTN SQGERFMERY APSAKDLASR DVVSRSMAME
MREGRGVGKN GDYIYLHLDH IDPKVLAERL PGITETGKIF AGVDLTRQPL PVTPTVHYNM
GGVPCNYHGE VVTLKDGNPD AVVPGLFAVG EAACVSVHGA NRLGSNSLID LVVFGRATGF
RLAELVKPNS KHGGINKEAD EKALGRLDHY RNAKGGTPTA QIRLDMQHTM QKHCAVFRDS
ELLGEGQGKI DKVYTRLDDI GITDRSLIFN TDLIETLELD NMLPQAVVTM HSAANRKESR
GAHMHEDYPD RDDANWMKHT ITWFDKGEVK IDYRPVHDYT LTDDVEYIKP KARVY
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