| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_1285 |
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| Symbol | |
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| ID | 5199791 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009511 |
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| Strand | + |
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| Start bp | 1437776 |
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| End bp | 1439053 |
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| Gene Length | 1278 bp |
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| Protein Length | 425 aa |
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| Translation table | 11 |
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| GC content | 74% |
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| IMG OID | 640580832 |
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| Product | sigma-54 dependent trancsriptional regulator |
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| Protein accession | YP_001261788 |
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| Protein GI | 148554206 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 32 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.456033 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTGATGA TCGGCATCAG CGAGAAGGCG CAGGGTTCGC AGCCGACGCT CGTGTCGTGG
CTGGCCGGCG CCGGCATCGA GACGATGCTG ATCGATCCGG CCGCAACCCA GGGCCGCGAC
GGCCGCCGCA TCCTGCACGT CACCGAAGTC GGCATGGCCC GGCAGCAGGA CGTGCTGATC
GATTTCGCCG ACGGCACTCC GGTGCTGCGC CGCGCCAAGG TCGGCCGCCC GGCGACCGCC
ATCTTCGGCT TCGAGGACAT GGCGTTCGGC CACGCGCTGA TCGCCGAGCT GATCCGTCCC
CGCCCGATGC CCGCCTGCGG CGAACCCGAG AGCGCGCGCT TCATCGGCAT CGCCGCGCGC
GTCGCCCGGA GCGACGCCAC CGTCCTGCTG CTCGGCGAGA CCGGCACCGG CAAGGAGGGC
GTCGCCCGCT ACATCCACGC CGCCTCGCCC CGCGCCGACA AGCCGTTCGT CGCGGTCAAT
TGCGCGGCGC TGCCCGAAAC CATGCTCGAA GCGATGCTGT TCGGCCACCA GAAGGGCGCC
TTCACCGGCG CCAGCGGCGC GGGCGAGGGC CTGTTCCGCG CGGCCGAGGG CGGCACGCTG
CTGCTCGACG AGATCGCCGA GCTGCCGCTC GCGCTCCAGG CCAAGCTGCT CCGCGCGCTC
CAGGAGCGCG AGGTCCTGCC CGTCGGCGCC ACCGCGCCGG TCGCGGTCGA CCTGCGCATC
ATCGCCTCCG GCAACCGCGA CCTCGCGGTC GAGGTCGAGG CCGGCCGCTT CCGCGCCGAC
CTCTACTGGC GGCTCAACGT CATGCCGCTC GTCCTCAAGC CGCTCGGCGC CCGCCGCCAG
GACATCCGCG CGATCGCCGC CGCCCTGATG CTGCGCCACA CGCCCGAGCA TGAGGAGCTG
GCCTGGCCGA CCGCGCAGGC GCTCGACCGG CTGATGGCGC ATGACTGGCC CGGCAATGTC
CGCGAGCTGG AGAACGTCCT GCAGCGCGCG ATGCTGATGC GCGACGGCGC GCGGATCGTC
GCCGAAGACC TGATCATCGA CCGCACCCGC GCCGCGCCGC GCGCTGCCGT CGCCGCCGTC
GAAACCGCGC CGACCGCGCC CGTCGTCGCC GATCCGGCCC CGATCCGCCT GGCCGACGCC
AAGCGGATCA GCCAGGCCCG CGCGATCGAG GAAGCCCTTG CCGCCACCGG CGGCCACCGT
CTCCGCGCCG CCCAGCGGCT CGGCATCTCC GAACGCACCC TGCGCTATCG CATGGCCGAT
ATGCGCGCGG TGGCTTGA
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| Protein sequence | MVMIGISEKA QGSQPTLVSW LAGAGIETML IDPAATQGRD GRRILHVTEV GMARQQDVLI
DFADGTPVLR RAKVGRPATA IFGFEDMAFG HALIAELIRP RPMPACGEPE SARFIGIAAR
VARSDATVLL LGETGTGKEG VARYIHAASP RADKPFVAVN CAALPETMLE AMLFGHQKGA
FTGASGAGEG LFRAAEGGTL LLDEIAELPL ALQAKLLRAL QEREVLPVGA TAPVAVDLRI
IASGNRDLAV EVEAGRFRAD LYWRLNVMPL VLKPLGARRQ DIRAIAAALM LRHTPEHEEL
AWPTAQALDR LMAHDWPGNV RELENVLQRA MLMRDGARIV AEDLIIDRTR AAPRAAVAAV
ETAPTAPVVA DPAPIRLADA KRISQARAIE EALAATGGHR LRAAQRLGIS ERTLRYRMAD
MRAVA
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