Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swit_1281 |
Symbol | |
ID | 5199787 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingomonas wittichii RW1 |
Kingdom | Bacteria |
Replicon accession | NC_009511 |
Strand | + |
Start bp | 1433575 |
End bp | 1434303 |
Gene Length | 729 bp |
Protein Length | 242 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 640580828 |
Product | RNA polymerase, sigma 28 subunit, FliA/WhiG |
Protein accession | YP_001261784 |
Protein GI | 148554202 |
COG category | [K] Transcription |
COG ID | [COG1191] DNA-directed RNA polymerase specialized sigma subunit |
TIGRFAM ID | [TIGR02479] RNA polymerase sigma factor, FliA/WhiG family [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | 35 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.587484 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGCTGGCTG AGAAGATCGA TCCGGCGCTC ACCTATGGCC GCAAGCCGCA GAAGACGCGG CCCGAGGACC TGGTCCGCGC GCACATGCAA CTCGTCCGCA AGATCGCCTG GCACGTCCAT GGCCGGGTCT CGACCGCGAT CGACGTCGAG GACCTGATCC AGATCGGCAT GATCGCGCTG GTCGAGGCCG CGAACGGCTA TGAGGATCGT GGCCACGCCT TCTCGACCTA TGCGTCGATG CGGGTGCGCG GCGCGATGAT CGATCATCTC CGCCGCCAGG CCGCGCTGAC CCGATCGGCG ATGGCCAAGC GGCGCGCGCT GCTCACCGCC AAGGCCGATT TCGAGAAGAA GCACGGCCGC AGCCCCAGCG AGTCCGAACT CGCCCAGGCG CTCGGCCTCG ACGGCGCCGC CTTCCACGCG CTGCTCGACG AGACCGCCGC GACCTATCAC GAGTCGATCG ACGAGGTATA TTCGGACCAG TCGATGTGGT TCGCCGACGT CGAGGAACGG GTCGACCAGA CGATCGAGCG CGAGGAACTG GCGGGCGCGC TCGCCGAGCA TATCTCCGAG CTGCCCGAGC GCGAGGCGAT GGTCCTCCAG CTCTATTTCG TCGAGGAGAT GAACCTCGAG GAGATCGGCC AGACGCTGGG CATCGGCGCC GCGCGCGTCT GCCAGATCAA GAAGGCCGCG CTCGACAAGC TGCGCGTGTC TCTACGGGAG TGGGGTTGA
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Protein sequence | MLAEKIDPAL TYGRKPQKTR PEDLVRAHMQ LVRKIAWHVH GRVSTAIDVE DLIQIGMIAL VEAANGYEDR GHAFSTYASM RVRGAMIDHL RRQAALTRSA MAKRRALLTA KADFEKKHGR SPSESELAQA LGLDGAAFHA LLDETAATYH ESIDEVYSDQ SMWFADVEER VDQTIEREEL AGALAEHISE LPEREAMVLQ LYFVEEMNLE EIGQTLGIGA ARVCQIKKAA LDKLRVSLRE WG
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