| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_1235 |
|---|
| Symbol | |
|---|
| ID | 5200952 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | - |
|---|
| Start bp | 1390465 |
|---|
| End bp | 1392480 |
|---|
| Gene Length | 2016 bp |
|---|
| Protein Length | 671 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 640580782 |
|---|
| Product | stage II sporulation E family protein |
|---|
| Protein accession | YP_001261738 |
|---|
| Protein GI | 148554156 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG2208] Serine phosphatase RsbU, regulator of sigma subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.0390865 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACCGCA TCCGCCTCGC CGGCCTCCTC GTGCTTGCGG TCGCCGCGCT GCTCAGCGCT
TTCGCGGGCG AGGCGATGCG CCGGCCGCTG TTCGACCTGT GGCAGCGCCT CGCGCCGCGC
GACCTGTCGG GCACGCCGGT CCATGTCGTG CTGGTCGATT CGGACAGCAT CGCCGCAGTC
GGGCCCTGGC CGTGGCCGCG CTACCACATG GCACGGCTGA CCGAAGAGAT CGCCGCGCGG
GGGCCGAAGG CGATCGGCTT CGACATGCTG TTCCCGGAGC CCGACCGGGT GCGGCCCGAC
ATCTTCGCGG CGCTCTATCC CGAACTCAGC CCGGCCGCCG CCGCCGAGGT CCAGGCGCTG
CCGCCGATGG ATCGGCTCTA CGGCCAGGTC GTCGGCAAGG CGCCGGTCGT GCTCGGCCGC
GCGGGGGTGG CGAGCGGGGG GACCGATCCC GCGCAACTGT TCGTCGACGC CGCGATCAAG
GGCGCATTGC CGCCCGACCT CCCCGACGAG CCGCGCGCGG TCGCCAACAT CCCTGAATTG
GAAGGCGCCG CGCTCGGCCA TGGCCTGCTC AACGGCCAGC CCGACAGCGA CGGGCGCGTC
CGGCGGGTGC CGCTGCTGAT GAAGCTCGGC GGCCGGGCGA TGCCCAGCCT GTCGCTCGAA
CTCGCCCGGC TGGCGCGGGA CCAGGAGGCG GTGACGGCCG AGGCGCGCGG GGTGGTGCTG
GCCGGCCGGC GCATCCCGGT CGATGCGGAG GGGCGGATGC GGCTGCGCTT CGGCCGCTTC
CCGGCGGCCG AGATCAGCTC GGCGGCCGAC GTGCTCCGCC GCAAATTCCC CGCCGATGCC
TTCGCCGGCA AGATCGTCCT GCTCGGGCTC GCCGCCGAAG GCACCGCCGA CATCGTCGCC
ACCCCCTTGG AGGCGGAAGG CTATGGCACG CTGGTGCAGG CGCAGGCGGT CGACGCGATC
CTGCGCGGCG GCTGGCTCGA CCGGCCGGCC TGGGCGGCGC CGGCCGAGTG GGGCGTGGGG
CTGCTGCTCG CGGTCGCGGT GCTGCTGTGC GGGCCGGCGC GCCGCCGTGC CCTGATGCTC
GTCCCGCTCG GGCTGGCGGT CGCGATCGCG CTGGCGGGCT GGTTCGCCTT CGACCTCGGC
TCGCTGCTGC TCGATCCGCT GCGCCCGCTG CTGCTCGGCG GCGGCGCGGC GGTCGGCGTG
GCGGGCGGCA TGTTCGTCGA GGCGCGGCGC GAGCGCGAGC GGCTGCGCGA GACGCTGGTG
CGCGAGCGGA TCGCCGCCGC CGCGACCGAA GGCGAGCTGC AGGCGGCGCG CTCCATCCAG
CTCGGCATGC TGCCGCCGCG CGAGGAGCTG GCAGGCTTCG ATCCGCGCAT CGACATCGAC
GCGCTGCTCG AACCCGCCAA GTCGATCGGC GGCGACCTCT ACGACGTGAT CCGGCTCGAT
GCCGACCGGA TCGCCTTCCT GGTCGGTGAC GTGACGGGGA AGGGCGTGCC CGCCGCTTTG
TTCATGGCGC TGTCCAAGGC GCTGGCGAAG AGCGTCGTGC TGCGCGGCGT CCCCAGCCTC
GCCGATGCCG CAGCGATCCT CAACGAGGAG CTGATGCGCG ACAATAGCGA GGCGATGAAC
GTGACCATGC TGGTCGGCAT CCTCGACCTG TCGAGCGGCG AACTGGTGCT GATGAGCGCG
GGGCATGAGG ACCCGCTCCA CATTCGCGGC GACGGCGCGA TCGCGATCCA CAAGCTCGAT
GGCGGGCCGC CCTTCTGCAT CGTCGACTTC CCCTATCCCG ACGAGCCGAT GACGCTCGCG
CCCGGCGAGG CGCTGGTGCT GATCTCGGAC GGGGTCAGCG AGGCGCAGAA TGGCGACGGC
GCGCTGTTCG GCCATGACCG GCTGCTCGCG GCGCTGCAAG GACGGACGAA CGCCTCGGCG
ATGGTCGAGG CGATGCGCGA CGCGGTGCGC GCCTTCGAGG ACGGCACTGA CCCGACCGAC
GACCTGACGG TGATGGCGGT CCGCTATCTG GGGTGA
|
|---|
| Protein sequence | MNRIRLAGLL VLAVAALLSA FAGEAMRRPL FDLWQRLAPR DLSGTPVHVV LVDSDSIAAV
GPWPWPRYHM ARLTEEIAAR GPKAIGFDML FPEPDRVRPD IFAALYPELS PAAAAEVQAL
PPMDRLYGQV VGKAPVVLGR AGVASGGTDP AQLFVDAAIK GALPPDLPDE PRAVANIPEL
EGAALGHGLL NGQPDSDGRV RRVPLLMKLG GRAMPSLSLE LARLARDQEA VTAEARGVVL
AGRRIPVDAE GRMRLRFGRF PAAEISSAAD VLRRKFPADA FAGKIVLLGL AAEGTADIVA
TPLEAEGYGT LVQAQAVDAI LRGGWLDRPA WAAPAEWGVG LLLAVAVLLC GPARRRALML
VPLGLAVAIA LAGWFAFDLG SLLLDPLRPL LLGGGAAVGV AGGMFVEARR ERERLRETLV
RERIAAAATE GELQAARSIQ LGMLPPREEL AGFDPRIDID ALLEPAKSIG GDLYDVIRLD
ADRIAFLVGD VTGKGVPAAL FMALSKALAK SVVLRGVPSL ADAAAILNEE LMRDNSEAMN
VTMLVGILDL SSGELVLMSA GHEDPLHIRG DGAIAIHKLD GGPPFCIVDF PYPDEPMTLA
PGEALVLISD GVSEAQNGDG ALFGHDRLLA ALQGRTNASA MVEAMRDAVR AFEDGTDPTD
DLTVMAVRYL G
|
|---|
| |