| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_1174 |
|---|
| Symbol | |
|---|
| ID | 5198512 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | + |
|---|
| Start bp | 1335209 |
|---|
| End bp | 1338682 |
|---|
| Gene Length | 3474 bp |
|---|
| Protein Length | 1157 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 640580721 |
|---|
| Product | 2-oxoacid ferredoxin oxidoreductase |
|---|
| Protein accession | YP_001261678 |
|---|
| Protein GI | 148554096 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG4231] Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCACCACG ACCGGATCGT CAGCCTCGAC AGCATCTACG GCGCCGAGGA GGGGCCGAGC
TTCATGACCG GCATCCAGGC GCTGGTGCGG CTGCCGATGA TGCAGCGGCG ACTCGATCGC
CGGAACGGGC TGAACACCGC CGGGCTCGTC ACCGGCTATC GCGGCTCGCC GCTCGGCGCC
TATGACCAGC AGCTCTGGAA GGCCTCCAAA TATCTCGACG CGCACGACAT CGTCTTCCAG
CCGGGATTGA ACGAGGACCT CGCCGCGACT GCGCTGTGGG GCGCGCAGAT GCACAGGGCG
TTCGGCAGGA CCCGCGCCGA CGGCGTGTTC GGCATCTGGT ACGGCAAGGG CAATGGCGTC
GACCGCACCG GCGACGTGTT CCGCAACGCC AATGTGCTGG GCACCGCCCC GCTTGGCGGG
GTGCTGGCGA TCGGCGGCGA CGACCATGCC GCCCAGTCGT CGATGTTCCC GCACCAGACC
GACGGCATCT TCCAGTCGGT GATGATGCCG GTGATCCAGC CCGCGACGGT CGGCGAGATC
TTGTCGCTCG GCCTCGCCGG CTTCGCGCTG TCGCGCTTCT CCGGCCTGTG GGTGGCGATG
AAGACGATCG CCGAAGTGGT CGAGAGCGCC GCCTCGTTCG AGCTGCCCGA CAGCTATCCG
CGCTTCATTT CCCCGGCGGA AGCGGTCCCC GCGCACGGGC TCAACTGGGA CCCGCGCGTC
GCCTGGCCGG CGCAGCGCAC CGAGCTCGAG CGGCGGATGA TCGAGGAGCG GCTGCCCGCG
GTCACCGCCT GGGCGCGCGC CAACGAGATC GACCGGCCGG TGCTACAGGG TGGCGGGCGG
CGGCTGTGCG TCGTCACCGT CGGCAAGGCG CACCAGGACG TGATGCAGGC GCTCGCCAAT
CTCGGCATCG ACGAAGGCGG CGCGCGGGCG ATCGGCCTGT CGGTCTACAA GGTGGCGATG
AGCTGGCCGC TCGACAGCGC GAGCCTGCTC GCCTTCGCCG ACGGCTTCGA GGAGATACTG
GTCGTCGAGG AGAAGCGCCC GGTCGTCGAG GAACAGGTCA AGGTCGCGCT GTTCAACCGC
AGCGGCGCCC GGCCGCGCGT CACCGGCAAG ACCGACGCCG AGGGCCGCGC CCTGCTGCCG
CAGACGCTGG AATTCGACCC GCTGATGGTC GCGCGGGCGA TCGTCGGCCG GCTGCCGGGC
ACCGCCGATC TCGCCGCGCG GCTGGCGGCG ATCGAGGCGC GGGTGCCGAC GGGCGAGGTC
GTCCCCTTCC CCGCGCGCAA GCCCTTCTTC TGCTCGGGCT GCCCGCACAA CAGCTCGACG
AAAACGCCCG AGGGGTCGAT CGCGGGCGGC GGCATCGGCT GCCACGTCAT GGCGGTGTCG
CAGCCCAAGC TCAAGACCGC GACCTTCAGC CAGATGGGCG GCGAGGGCCT GCAATGGGTC
GGCGCCGCGC CCTTCTCCGA GACCGGCCAT ATCTTCCAGA ATCTGGGCGA CGGCACCTAT
CAGCATTCGG GGCTGCTCGC GATCCGCGCG GCGGTGGCGG CGAAGGCCAA CATCACCTTC
AAGATCCTCT ACAACGACGC GGTGGCGATG ACCGGCGGCC AGCCGGCCGA GGGCGCGATC
GACCCCGCAA GGATCAGCCG CCAGCTCGCC GCCGAGGGCG TCGGCCAAAT CCACCTGGTC
AGCGACGATC CCGACCGCTG GCGCGCCGCG CCCGACCTGG CCGAGGGCGT GACGATCGCG
CATCGCGACG ATCTCGACCG GGTGCAGCGC CGGCTGCGCG AGGTGCCCGG CGTCACCGCG
ATCATCTACG AACAGACCTG CGCCGCCGAG AAGCGTCGCC GCCGCAAGCG CGGCGAATTC
CCCGATCCCG ACAAGCGCAT CTTCATCAAC CCGCGCGTCT GCGAGGGCTG CGGCGACTGC
TCGGTCCAGT CCAACTGCAT CGCGGTCGAG CCGCTGGAGA CCGGTTTCGG CCGCAAGCGG
CGGATCAACC AGTCGAGCTG CAACAAGGAT TTCTCCTGCA TCAAGGGCTT CTGCCCGAGC
TTCGTCGAGG TCGAGGGCGC GGTGCTGCGC AAGCCCGACG GCGAACGGCT GAAGGCGTTC
GAGGCGAGCC GCTTCGCCGC GCTGCCGGAG CCCGAGCGTC CCGCGCGGGA CGGCGTCGCC
AACATCTATG TCGCCGGGAT CGGCGGGCTG GGCGTGCTGA CGATCGGCGC GTTGCTCGGC
ACCGCCGCCC ATCTCGACGG GCGCGGCGCG ACCGTGCTCG ACTTCACCGG CCTCGCCCAG
AAGAACGGCG CGGTGGTCAG CCAGGTGCGG ATCGCGCCGC CGGGGGTGCC GATCCACGCC
GTCCGCATCG GCGCGGGCGA GATCGACGTG CTGCTGGGCA CCGACATGGT CGTCGCAGCC
GGGCAGGACG TGCTGCGCCG GATCGCCGCC GACCGATCGG TGCTCGTCCT CAACGACGAC
GAGACGCCGA CCGCCGACGT CGTCACCGAC CGCGACTTCG CGCTGCCGGG CGCGGCGATG
GCCGACACGC TCACGCGCCG CGCCCGGGCC ACGCATCGCC TGCGCGCGAC GAGCATCGCC
GAGGGACTGT TCGGCAACAA TGTCGCCGCC AACACGCTGC TGCTCGGCCA TGCCTGGCAG
AAGGGGCTGA TCCCGCTCGA CGCCGAGGCG GTGCGCGGCG CGATCCGGGC AAACGGCGCG
GCGGTGTCGC TCAACCTGCG CGCGTTCGAC TGGGGCCGGC TCGCCGCGAT CGACCTCGCG
CTGGTCGAGG AGATGGCGGG GCTCGCCGCC CCCGCGCCGC AGACCGAGAC GATCGACGCG
CTGGCCGCGC GCCTCGCGGC CGAGCTGACC GCCTATCAGG ACGCGCGCTA TGCGGCGCGC
TTCGCCGCGC TGGTCGCCGC CGCGCGCCGC GCCGCCGCCG GGCTCGGCCG GGAGGGCGAG
GATTTCGCCG AGGCGGTCGC CCGCAACGCC TACAGGCTGA TGGCGTACAA GGACGAATAT
GAGGTGGCGC GGCTCCATGC CGATCCGGCG TTCGCGGCGA CGCTGGGCGA GCAATTCTCG
GACCGCAGGC GCCTGTCGGT CTATCTGGCG CCGCCGCTGC TGTCGCGGAT CGACCCCGCG
ACCGGCCGGC CGCGCAAGCG CCGGTTCGGG CCGTGGATCT TCACCGCCTT CCGCCTGCTC
GCCCGGATGA AGGGGCTGCG CGGAAGCTGG GCCGATCCGT TCGGCCATAG CCATGAACGC
CGGACCGAGC GGCAGCTGAT CGAGGACTAT GTCGCGCTGG TCGGCGAACT GGCGGCGGAC
CTGTCGCCCG CCACTTTGCC GATCGCCACC GAGCTCGCCC GCCTGCCCGA CGCGATCCGC
GGCTACGGCC CGGTCAAGGC GGCGGCGATC GCCGAGGCCG AAGCGCGCAA GGCGACGCTG
CTGGAAGCGC TGGCCGAGAG CCGCCGCCCG TCGGAGGCAA GGGCCGCCGC CTGA
|
|---|
| Protein sequence | MHHDRIVSLD SIYGAEEGPS FMTGIQALVR LPMMQRRLDR RNGLNTAGLV TGYRGSPLGA
YDQQLWKASK YLDAHDIVFQ PGLNEDLAAT ALWGAQMHRA FGRTRADGVF GIWYGKGNGV
DRTGDVFRNA NVLGTAPLGG VLAIGGDDHA AQSSMFPHQT DGIFQSVMMP VIQPATVGEI
LSLGLAGFAL SRFSGLWVAM KTIAEVVESA ASFELPDSYP RFISPAEAVP AHGLNWDPRV
AWPAQRTELE RRMIEERLPA VTAWARANEI DRPVLQGGGR RLCVVTVGKA HQDVMQALAN
LGIDEGGARA IGLSVYKVAM SWPLDSASLL AFADGFEEIL VVEEKRPVVE EQVKVALFNR
SGARPRVTGK TDAEGRALLP QTLEFDPLMV ARAIVGRLPG TADLAARLAA IEARVPTGEV
VPFPARKPFF CSGCPHNSST KTPEGSIAGG GIGCHVMAVS QPKLKTATFS QMGGEGLQWV
GAAPFSETGH IFQNLGDGTY QHSGLLAIRA AVAAKANITF KILYNDAVAM TGGQPAEGAI
DPARISRQLA AEGVGQIHLV SDDPDRWRAA PDLAEGVTIA HRDDLDRVQR RLREVPGVTA
IIYEQTCAAE KRRRRKRGEF PDPDKRIFIN PRVCEGCGDC SVQSNCIAVE PLETGFGRKR
RINQSSCNKD FSCIKGFCPS FVEVEGAVLR KPDGERLKAF EASRFAALPE PERPARDGVA
NIYVAGIGGL GVLTIGALLG TAAHLDGRGA TVLDFTGLAQ KNGAVVSQVR IAPPGVPIHA
VRIGAGEIDV LLGTDMVVAA GQDVLRRIAA DRSVLVLNDD ETPTADVVTD RDFALPGAAM
ADTLTRRARA THRLRATSIA EGLFGNNVAA NTLLLGHAWQ KGLIPLDAEA VRGAIRANGA
AVSLNLRAFD WGRLAAIDLA LVEEMAGLAA PAPQTETIDA LAARLAAELT AYQDARYAAR
FAALVAAARR AAAGLGREGE DFAEAVARNA YRLMAYKDEY EVARLHADPA FAATLGEQFS
DRRRLSVYLA PPLLSRIDPA TGRPRKRRFG PWIFTAFRLL ARMKGLRGSW ADPFGHSHER
RTERQLIEDY VALVGELAAD LSPATLPIAT ELARLPDAIR GYGPVKAAAI AEAEARKATL
LEALAESRRP SEARAAA
|
|---|
| |