| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_1163 |
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| Symbol | |
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| ID | 5198666 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009511 |
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| Strand | + |
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| Start bp | 1320501 |
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| End bp | 1322618 |
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| Gene Length | 2118 bp |
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| Protein Length | 705 aa |
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| Translation table | 11 |
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| GC content | 75% |
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| IMG OID | 640580710 |
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| Product | penicillin-binding protein 1C |
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| Protein accession | YP_001261667 |
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| Protein GI | 148554085 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG4953] Membrane carboxypeptidase/penicillin-binding protein PbpC |
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| TIGRFAM ID | [TIGR02073] penicillin-binding protein 1C |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.22385 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.584003 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGACTGC CGACGCGCCG GGCGTGGCGG CGGGCGGCGC TGTTCGGTCC GCTCGCGCTG
CTGCTGGCGC TGTTCCTCCT CACCCTGCCG CCGGCGATGC CGGCGCCCGC CATGGTGAAG
GCGGCGTGGC GACCGACCGA GAGCTGGCTC TACGACCGCG ACGGCCGGCT GCTCGAAAGC
GTCCGGATCG ACTTCACCCA GCGGCGGCTC GCCTGGGTGC CGCTCGACCG CATGGCCCCC
GCTTTGCCCC GCGCGGTGAT CGCGGCCGAG GATCGCCGCT TCGCCACCCA TGGCGGGGTC
GACTGGCTGG CGCTGGCCGG ATCGATCCGC GACGGCCTGT CGGGCCGCCG GCCGCGCGGC
GCCTCGACGA TCACCATGCA GCTCGCCGGC TTCCTCGCCC CCGAGCTGGC CCGGCCGGGC
GCCCGTTCGC TCCGCCAGAA GGCGCGGCAG ATGCGGGCCG CGATGGCGCT GGAGAGAGGC
TGGTCGAAGG ACGATATCCT CGAAGCCTAT CTCAACCTCG CCGGCTTCCG GGGCGAGGCG
CAGGGGGTGA TGGCGGCGAG CCGGCAATTG TTCGGCAAGG CGCCCGACCG GCTGTCGGGC
GACGAGGCGC TGCTGCTGAC CGCGCTCCTG CCCGATCCGC AGGCCCCGCC CGAACGGGTC
GCGCGCCGCG CCTGCGCGAT GAAGCCCGCC GACTGCCCGG CGCTGACCGC GATCGCCGCG
CGGTCGCTCG GCACCGCCCG CCGCCAGCGG ATCGATCCGG GGCTCGCCCC GCACCTCGCC
CGGCGGCTGA TCGACCATGC GGGGATGCGG GTGACGACGA CGCTCGACGG CGCGATCCAG
CGCGCCGCGA TCACCGCCCT CTCCCGCCAG CTCATCGGCC TGGGCGACCA GCGCGCCCGC
GACGGCGCGG TGATCGTCCT CGACAACGCC ACCGGCGACA CGCTCGCCTA TGTCGGCGGG
GTCGGCGGCG CGTCGACGGC GGCGGCGGTC GACGGCGCCG GGGCGCCGCG CCAGGCCGGA
TCGACGCTCA AGCCCTTCCT CTATGCATCG GCGATCGAGC GCGGCTACCT GACCGCCGGG
TCGATCCTCG ACGACAGCCC GGTCCAGCTC GACACCGCCT CGGGCCTCTA TGTGCCCCAG
AATTACGACC GCAGCTTCCG GGGCCCGGTC TCGGCCCGCT CGGCGCTGGC GGCGTCGCTC
AACGTGCCGG CGGTGCGGAC GCTGCTGCTG GTCGGCGTCA ACGCGTTCCG CGACCGGCTG
TGGGACCTCG GCTATCGCGG GCTGACCGAG GATGGCGACT ATTACGGCTT CTCGCTCGCG
CTCGGATCGG CCGAGGTGAC ACTCGCCGAA CAGGCCAACG CCTTCCGCGC GCTCGCCAAT
GCCGGCCGCT GGTCGCCCGC CCGGCTGCGC GCCGAGGATC GCCGCGAGGC ATCCCGCCCG
GTGATCTCGC CCGCCGCCGC CTGGATCACC GCCGACATCC TGTCCGATCC GGGCGCGCGG
GCGGGGACCT TCGGGCTCGA CAGCGCGCTG CGCCTGCCCT TCTGGGCGGC GGTCAAGACC
GGTACCTCCA AGGCGATGCG CGACAATTGG TGCGTCGGCT TTTCGAGCCG CTACACCGTC
GCCGTCTGGG TCGGGAACCT GGAGGGCGAT TCGATGCGCG CCGTCTCCGG CACCAGCGGC
GCGGCACCGG TGTGGCGCGA GGTGATGCTG GCGCTCCACC GCCAGGCCCC ACCGCCCCGC
CCGGCCTGCC CGGCCGACGT CGAGAGCCGC GCGGTCCGCT TCGCCGACGG GATCGAGCCG
CCGCGCACCG AATATTTCCT GCGCGGCACC GGCCAGGCGC TGTTCGGCCC CGCCCCGCCC
GAGGCCCGCC GCGCCCGCAT CGCCAGCCCG GTGTCGGGCA GCATCTACGC GCTCGACCCC
GACATCCCCG GCGACCGCCA GCGCATCCGC ATCCTCGTCG CCGGCGCGGT GGCGGGCCAC
CGCCTTGTCC TCGACCGCAG GGACATCGGC CCGGCCGACG CGCAGCCGCT CGTCCTGCCC
GGCCCGGGCG CGCACCGGTT GCAACTGCGG CGCCCGGACG GCGGCGTCGC CGACCAGATA
TTGTTCACGG TGCGCTAG
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| Protein sequence | MRLPTRRAWR RAALFGPLAL LLALFLLTLP PAMPAPAMVK AAWRPTESWL YDRDGRLLES
VRIDFTQRRL AWVPLDRMAP ALPRAVIAAE DRRFATHGGV DWLALAGSIR DGLSGRRPRG
ASTITMQLAG FLAPELARPG ARSLRQKARQ MRAAMALERG WSKDDILEAY LNLAGFRGEA
QGVMAASRQL FGKAPDRLSG DEALLLTALL PDPQAPPERV ARRACAMKPA DCPALTAIAA
RSLGTARRQR IDPGLAPHLA RRLIDHAGMR VTTTLDGAIQ RAAITALSRQ LIGLGDQRAR
DGAVIVLDNA TGDTLAYVGG VGGASTAAAV DGAGAPRQAG STLKPFLYAS AIERGYLTAG
SILDDSPVQL DTASGLYVPQ NYDRSFRGPV SARSALAASL NVPAVRTLLL VGVNAFRDRL
WDLGYRGLTE DGDYYGFSLA LGSAEVTLAE QANAFRALAN AGRWSPARLR AEDRREASRP
VISPAAAWIT ADILSDPGAR AGTFGLDSAL RLPFWAAVKT GTSKAMRDNW CVGFSSRYTV
AVWVGNLEGD SMRAVSGTSG AAPVWREVML ALHRQAPPPR PACPADVESR AVRFADGIEP
PRTEYFLRGT GQALFGPAPP EARRARIASP VSGSIYALDP DIPGDRQRIR ILVAGAVAGH
RLVLDRRDIG PADAQPLVLP GPGAHRLQLR RPDGGVADQI LFTVR
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