| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_1155 |
|---|
| Symbol | |
|---|
| ID | 5198350 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | + |
|---|
| Start bp | 1304708 |
|---|
| End bp | 1306525 |
|---|
| Gene Length | 1818 bp |
|---|
| Protein Length | 605 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 640580702 |
|---|
| Product | diguanylate cyclase |
|---|
| Protein accession | YP_001261659 |
|---|
| Protein GI | 148554077 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2199] FOG: GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.290971 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.125636 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCATAG CGACGATCAC CAACTGGGCC TATGGCGTCA CCCTGCTGCT GACCTTCGGG
TCGGGCGCGG CCTTCATGGC GTCGGTCCAG GCCGACGGCG ACGAACGGAT CGCGGTCGAG
CGCCGCTCCG ACTATATCCG CATCGCCGAC GACATCGAGC TGATCGTCGA GCGGATGACC
GACCAGGCCC GGCTCTACGC CATGCGCGGC GAGGCCGAGC ACAAGACCGC CTGGCTGCGC
GACCGCGACG ATGTCGGCGT GGTCGACCGC ACCGTCGGCC GGCTCGACGC GCTCGGCATC
CCCCGGCACG AATATGCCGA GCTGCTGACG GCGGACCGCG ACCTCGACCG GATCGAGGCG
ATCGAGCGGC GCGCGATCGC CGCCGTCGAC CAAGGCGACC GGGCGGAGGC GCAGCGGCTG
CTCTACGGGC CCGACTATCT GGCGCTCGAC GCCGGCGTCG ACCGGTCGCT GGGCGCGTTC
AAGCAGGCGC TGAAGGGGCG CGCCGAACGC GATCTCCAGC GCGCCCGCGA GCGCGCCGAC
CGATGGGACG ACATCGCCCG GCTGCTGCTG GGGCTCACCG GCCTGCTGTT CCTGGCCGTG
CTCTACTTCA TCCTGTCGCG GCGCGTGGCG CGCCCGCTCG CGCATATGAG CGACGTCGTC
GTCCGCATGG CCGACCGCGA TTACGACGCC GACCTGCCCG ACGACCGCCG CCATGACGAG
ATCGGCGAGG TCACCCGCGC GCTGCGCCTG TTCCGGCGCA ACAGCATCGA GCGCGAGCGG
CTCGAGCAGG AGCGCGACGA GGACCGCCGG ATCAAGGACC TGATCGCGCG GATGATGCAC
CGGATGCAGG GCTGCGACGT CGAAGCCGAG CTGGCCGACG TGGTGGTCTG CTACGCGCCG
CAGATCTTCC CCGACCTCGC CGGCCACATC TTCGTCTATG ACCATGGGCG CGGCCGGCTG
GCGACGATCG GCCGCTGGCA GGACCCGAAG CTGAGCATCG CCGATTTCGC TCCCTCCTTC
TGCTGGGGCC TGCGTCGCGG CCATTCGCAT CGCAGCAACG CGAAGGGAGA GGACATCTGC
TGCCAGCATA TCGGCGACAT CGACGGACAG GACTGCCTGT GCGTGCCGCT GATGGCGCAG
GGCGGCACGG TGGGGATGCT CTATTTCGAA GGACAGGACG GCGACGGCCG CTATGCCGAG
CGGGCGATCT ACCTCGACCT CATGTCCGAG AATATCGGCC TCGCCCTCGC CAACATCCAG
CTCCGGGCGA CGCTCGGCGC GCTGGCGACG CGCGATCCGC TGACCGGCCT CTCCAACCGC
CGCCATCTCG ACGAGGTGTT CAACGCCGAA CGCGCGCTGG CGGAGAGCCA GCACGCGCCG
CTCGGCTGCC TGCTGGTCGA CATCGACCAT TTCAAGCGCT TCAACGACGA ATTCGGCCAT
GATGCGGGCG ACCTCGTCAT GCAGCATGTC GCCCAGGTGC TGAAGGGCCA TGCCCGCGAA
CGCGACCTCG CCTGCCGCTA TGGCGGCGAG GAATTCGTCC TGCTGATGCC CACCCGCGAC
AGCGCCGCCG CCGCCGAGCG GGCCGAGGAG ATCCGCCAGA CGATCCGCAA GGTCTCGCTC
GCCTATCGCG GGCGCCCGCT GCCGCCGGTG ACGGTGTCGA TCGGCGTCGC CGCCTATCCG
ACGGAGGCCG ACGCCGCGAG CCTGATCAGC GTCGCCGACG GCGCGCTGCT CGCCGCCAAG
GAGAACGGGC GCGACCGGGT GGTGATCGCC GGCCGCACCC CGCCGGGGCC GAAGCACCGG
GTCCGGGCCG CCTCCTGA
|
|---|
| Protein sequence | MRIATITNWA YGVTLLLTFG SGAAFMASVQ ADGDERIAVE RRSDYIRIAD DIELIVERMT
DQARLYAMRG EAEHKTAWLR DRDDVGVVDR TVGRLDALGI PRHEYAELLT ADRDLDRIEA
IERRAIAAVD QGDRAEAQRL LYGPDYLALD AGVDRSLGAF KQALKGRAER DLQRARERAD
RWDDIARLLL GLTGLLFLAV LYFILSRRVA RPLAHMSDVV VRMADRDYDA DLPDDRRHDE
IGEVTRALRL FRRNSIERER LEQERDEDRR IKDLIARMMH RMQGCDVEAE LADVVVCYAP
QIFPDLAGHI FVYDHGRGRL ATIGRWQDPK LSIADFAPSF CWGLRRGHSH RSNAKGEDIC
CQHIGDIDGQ DCLCVPLMAQ GGTVGMLYFE GQDGDGRYAE RAIYLDLMSE NIGLALANIQ
LRATLGALAT RDPLTGLSNR RHLDEVFNAE RALAESQHAP LGCLLVDIDH FKRFNDEFGH
DAGDLVMQHV AQVLKGHARE RDLACRYGGE EFVLLMPTRD SAAAAERAEE IRQTIRKVSL
AYRGRPLPPV TVSIGVAAYP TEADAASLIS VADGALLAAK ENGRDRVVIA GRTPPGPKHR
VRAAS
|
|---|
| |