Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swit_1154 |
Symbol | |
ID | 5198349 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingomonas wittichii RW1 |
Kingdom | Bacteria |
Replicon accession | NC_009511 |
Strand | + |
Start bp | 1303200 |
End bp | 1304621 |
Gene Length | 1422 bp |
Protein Length | 473 aa |
Translation table | 11 |
GC content | 76% |
IMG OID | 640580701 |
Product | RND efflux system outer membrane lipoprotein |
Protein accession | YP_001261658 |
Protein GI | 148554076 |
COG category | [M] Cell wall/membrane/envelope biogenesis [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1538] Outer membrane protein |
TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 0.182996 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.122717 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTGAGGA AACTCCTGCT CGCGGGTTCC GCGCTGCTGA CCGTCGCCGC CGCCGGACCC GACTATGTCC GCCCGGCGGC CCCGGCCGGC GCCGAGGGTC CCTTCATCAA GGCCCCGGCC GCCCCCGTCA CCCCGGCCGA GCCCGACCAG GCCTGGTGGC GGCTCTACCA GGACCCGGTG CTCGACCGGC TGATCGCCGA CGCCCTCGCG GCGAACACCG ACCTGCGCAT CGCCGTCGCC AATCTCGACA GGGCGCGCGC GCTGCTGCGC GAAAGCCGGG CGGGCCGCCT GCCGCGGACC GACGTCTCCG CCGGGGCGAA CTATGGCCGC CTGCCCGCGA CCCAACGCCC GGCCGGCGCG GAGCGCGAGG ACTGGTCGTT CGACGCCGGG CTGTCGGTCT CCTACGAGGT CGACCTGTTC GGCCGGGTCG GCCGCTCGAT CGAGGCCGCG CGCGGCGACG CGCAGGCGGC CGAGGCGGCG CGCGACGCGG TGAAGGTGGC GATCGCCGCC GAGACGGCGC GCGCCTATGC CGACGCCTCC TCGGCGGTCG AGCGGCTGGC GGTCGCAGAA CGCACGCTCG GACTGCTCGA CCAGGTCGTC GGCCTGACCG CCAAGCGTTT CGAGGCTGGC CGCACCTCGA AGCTCGACCT GTCGCGCGCC TCGGCGCTGC GCGAGCAGCA GCGGGCGACG CTCTCGCCGC TGCGCGCCCA GCGCGACGCG GCGCTGTTCC GGCTGGCGAC GCTGACCGGC CGGACGCCGG TCGATCTGCC GCCCGAGGTG GGCGCCCGCG CGCTGACGCT GCGGCTCGAC CGGCCGATCC CGGTCGGCGA CGGGCGCGGC CTGCTGGCCC GGCGCCCCGA CATCCGCGAG GCGGAGCGCA AGCTGGCGGC CGAAACCGCG CGGATCGGCG TCGCCACCGC CGATCTCTAT CCGCGCATCG CGCTCGGCGG CTCGATCGGA TCGACCGGCC CCTCGCTCGG CGACATGTTC GGCGGCGGTC CGCTGCGCTG GCTGCTCGGC CCGCTGCTGA GCTGGAACTT CCCCAACCAG GAGGCCGGCC GCGCGAAGAT CGCCCAGGCC AAGGCGTCGA CCCGCGCGGC GCTCGCCGGC TTCGACGGGA CGGTGCTGCG CGCGCTGGAG GAGACCGAGA CCGCGCTGTC GGCCTATGGC CATGAGCTGG AGCGCAGCGA GGCGCTGCGC GAAGCGGCGG CGCAGGCGCA GACCGCCGCC ACGATCAGCC GCGCCCAGCT CCGCGAGGGG CGCGTCGACT TCCTGACCGT GCTCGACGCC GAGCGGACCT CGGCCAGCGC CGACGCCGAC CTGGCCGAGT CCGACGCGCG CGTGACCAAC GCCCAGGTCG ACCTGTTCCG CGCGCTCGGC GGCGGCTGGC AGGCCGGGGA CGGCAAGATG GCGGCGCGCT GA
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Protein sequence | MLRKLLLAGS ALLTVAAAGP DYVRPAAPAG AEGPFIKAPA APVTPAEPDQ AWWRLYQDPV LDRLIADALA ANTDLRIAVA NLDRARALLR ESRAGRLPRT DVSAGANYGR LPATQRPAGA EREDWSFDAG LSVSYEVDLF GRVGRSIEAA RGDAQAAEAA RDAVKVAIAA ETARAYADAS SAVERLAVAE RTLGLLDQVV GLTAKRFEAG RTSKLDLSRA SALREQQRAT LSPLRAQRDA ALFRLATLTG RTPVDLPPEV GARALTLRLD RPIPVGDGRG LLARRPDIRE AERKLAAETA RIGVATADLY PRIALGGSIG STGPSLGDMF GGGPLRWLLG PLLSWNFPNQ EAGRAKIAQA KASTRAALAG FDGTVLRALE ETETALSAYG HELERSEALR EAAAQAQTAA TISRAQLREG RVDFLTVLDA ERTSASADAD LAESDARVTN AQVDLFRALG GGWQAGDGKM AAR
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