Gene Swit_1154 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwit_1154 
Symbol 
ID5198349 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSphingomonas wittichii RW1 
KingdomBacteria 
Replicon accessionNC_009511 
Strand
Start bp1303200 
End bp1304621 
Gene Length1422 bp 
Protein Length473 aa 
Translation table11 
GC content76% 
IMG OID640580701 
ProductRND efflux system outer membrane lipoprotein 
Protein accessionYP_001261658 
Protein GI148554076 
COG category[M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG1538] Outer membrane protein 
TIGRFAM ID[TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value0.182996 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.122717 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTGAGGA AACTCCTGCT CGCGGGTTCC GCGCTGCTGA CCGTCGCCGC CGCCGGACCC 
GACTATGTCC GCCCGGCGGC CCCGGCCGGC GCCGAGGGTC CCTTCATCAA GGCCCCGGCC
GCCCCCGTCA CCCCGGCCGA GCCCGACCAG GCCTGGTGGC GGCTCTACCA GGACCCGGTG
CTCGACCGGC TGATCGCCGA CGCCCTCGCG GCGAACACCG ACCTGCGCAT CGCCGTCGCC
AATCTCGACA GGGCGCGCGC GCTGCTGCGC GAAAGCCGGG CGGGCCGCCT GCCGCGGACC
GACGTCTCCG CCGGGGCGAA CTATGGCCGC CTGCCCGCGA CCCAACGCCC GGCCGGCGCG
GAGCGCGAGG ACTGGTCGTT CGACGCCGGG CTGTCGGTCT CCTACGAGGT CGACCTGTTC
GGCCGGGTCG GCCGCTCGAT CGAGGCCGCG CGCGGCGACG CGCAGGCGGC CGAGGCGGCG
CGCGACGCGG TGAAGGTGGC GATCGCCGCC GAGACGGCGC GCGCCTATGC CGACGCCTCC
TCGGCGGTCG AGCGGCTGGC GGTCGCAGAA CGCACGCTCG GACTGCTCGA CCAGGTCGTC
GGCCTGACCG CCAAGCGTTT CGAGGCTGGC CGCACCTCGA AGCTCGACCT GTCGCGCGCC
TCGGCGCTGC GCGAGCAGCA GCGGGCGACG CTCTCGCCGC TGCGCGCCCA GCGCGACGCG
GCGCTGTTCC GGCTGGCGAC GCTGACCGGC CGGACGCCGG TCGATCTGCC GCCCGAGGTG
GGCGCCCGCG CGCTGACGCT GCGGCTCGAC CGGCCGATCC CGGTCGGCGA CGGGCGCGGC
CTGCTGGCCC GGCGCCCCGA CATCCGCGAG GCGGAGCGCA AGCTGGCGGC CGAAACCGCG
CGGATCGGCG TCGCCACCGC CGATCTCTAT CCGCGCATCG CGCTCGGCGG CTCGATCGGA
TCGACCGGCC CCTCGCTCGG CGACATGTTC GGCGGCGGTC CGCTGCGCTG GCTGCTCGGC
CCGCTGCTGA GCTGGAACTT CCCCAACCAG GAGGCCGGCC GCGCGAAGAT CGCCCAGGCC
AAGGCGTCGA CCCGCGCGGC GCTCGCCGGC TTCGACGGGA CGGTGCTGCG CGCGCTGGAG
GAGACCGAGA CCGCGCTGTC GGCCTATGGC CATGAGCTGG AGCGCAGCGA GGCGCTGCGC
GAAGCGGCGG CGCAGGCGCA GACCGCCGCC ACGATCAGCC GCGCCCAGCT CCGCGAGGGG
CGCGTCGACT TCCTGACCGT GCTCGACGCC GAGCGGACCT CGGCCAGCGC CGACGCCGAC
CTGGCCGAGT CCGACGCGCG CGTGACCAAC GCCCAGGTCG ACCTGTTCCG CGCGCTCGGC
GGCGGCTGGC AGGCCGGGGA CGGCAAGATG GCGGCGCGCT GA
 
Protein sequence
MLRKLLLAGS ALLTVAAAGP DYVRPAAPAG AEGPFIKAPA APVTPAEPDQ AWWRLYQDPV 
LDRLIADALA ANTDLRIAVA NLDRARALLR ESRAGRLPRT DVSAGANYGR LPATQRPAGA
EREDWSFDAG LSVSYEVDLF GRVGRSIEAA RGDAQAAEAA RDAVKVAIAA ETARAYADAS
SAVERLAVAE RTLGLLDQVV GLTAKRFEAG RTSKLDLSRA SALREQQRAT LSPLRAQRDA
ALFRLATLTG RTPVDLPPEV GARALTLRLD RPIPVGDGRG LLARRPDIRE AERKLAAETA
RIGVATADLY PRIALGGSIG STGPSLGDMF GGGPLRWLLG PLLSWNFPNQ EAGRAKIAQA
KASTRAALAG FDGTVLRALE ETETALSAYG HELERSEALR EAAAQAQTAA TISRAQLREG
RVDFLTVLDA ERTSASADAD LAESDARVTN AQVDLFRALG GGWQAGDGKM AAR