Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swit_1144 |
Symbol | |
ID | 5196356 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingomonas wittichii RW1 |
Kingdom | Bacteria |
Replicon accession | NC_009511 |
Strand | + |
Start bp | 1288000 |
End bp | 1289124 |
Gene Length | 1125 bp |
Protein Length | 374 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 640580691 |
Product | secretion protein HlyD family protein |
Protein accession | YP_001261648 |
Protein GI | 148554066 |
COG category | [V] Defense mechanisms |
COG ID | [COG1566] Multidrug resistance efflux pump |
TIGRFAM ID | [TIGR00998] efflux pump membrane protein (multidrug resistance protein A) |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 0.143245 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.639337 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCTGACG TCGATCCCCC GAAGACCAGC GCCGATCCCG TCGAGGACAG CGAGAGCGAG GCCCGCCGCG AAGCCCGCCT CCGGGCGCGC AAGACCTGGC TGATCCGCTT CGCGATCGGG CTGGCGGTCG TCGCACTGAT CTTCGGCGCC TGGTACCTGC TGATCGGGCG CAACCATGTC AGCACCGACA ACGCCTATGT GAATGCCGAG GTGGCGCAGG TCACGCCGCT GATCTCGGCC CAGGCGGTCG AGGTGCGGGT CAGCGACACC CAGGCGGTGA AGCGCGGCGA CATCCTCGTC CGCCTCGACG ACAGCAACAT GCGGATCGCG CTCGCCCAGG CGGAGGCCGA TCTGGCGCGG GCCCGGCGGA TGTTCCGCCA GGGGACCGCC ACCAGCGCCG CGCTGGCGGC ACAGGTCAAC GCGCGCGAGG CCGACATCGC CACCGCCCAG TCGGATTACG ACAAGGCGCG CATCGACCTC GACCGCCGCC TCGCGCTCCA GCCGTCGGGC GCGGTGTCGG GCGACGAACT GACCGCCGCG CGCAACGCCT TCAACGCCGC CCGCGGCAAG CTCGCCCAGG CCCGCGCCAA CCAGGGCGCC GCCGCCGGCG AACTGGCCGC GAACCAGGCG CTGGTCGCCG GATCGACGGT CGAGACCGAC CCAATGGTGC TCGCCGCCAA GGCCAAGCTC GCCGCCGCCC AACTCGACTT CGAGCGCGCC GTGATCCGCG CGCCGATCGA CGGCGTCGTC ACGCGCCGCC AGGTCCAGGT CGGCCAGCGG GTGACGCAAG GGTCCCCGAT CATGATGATC GTCCCGGTGT CGCAGGTCTA TGTCGACGCC AATTTCAAGG AACGGCAGCT CCGCCGGGTG AAGCCCGGCC AGTCGGCCAA GGTCACCGCC GACCTCTATG GCGGCGGCGT CGTCTACCAC GGCAAGGTAG TCGGCTTCTC GGGCGGCACC GGATCGGCCT TCGCGCTGAT CCCGGCACAG AACGCCACCG GCAACTGGAT CAAGGTGGTC CAGCGCCTGC CGGTCCGCAT CGAGCTCGAT CCAAGCCAGC TGGCCGAGCA TCCGCTGCGC GTCGGCCTGT CGATGGAAGT CGATATCGAC GTCTCCGGCG ACTGA
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Protein sequence | MADVDPPKTS ADPVEDSESE ARREARLRAR KTWLIRFAIG LAVVALIFGA WYLLIGRNHV STDNAYVNAE VAQVTPLISA QAVEVRVSDT QAVKRGDILV RLDDSNMRIA LAQAEADLAR ARRMFRQGTA TSAALAAQVN AREADIATAQ SDYDKARIDL DRRLALQPSG AVSGDELTAA RNAFNAARGK LAQARANQGA AAGELAANQA LVAGSTVETD PMVLAAKAKL AAAQLDFERA VIRAPIDGVV TRRQVQVGQR VTQGSPIMMI VPVSQVYVDA NFKERQLRRV KPGQSAKVTA DLYGGGVVYH GKVVGFSGGT GSAFALIPAQ NATGNWIKVV QRLPVRIELD PSQLAEHPLR VGLSMEVDID VSGD
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