| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_1143 |
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| Symbol | |
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| ID | 5196355 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009511 |
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| Strand | + |
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| Start bp | 1286541 |
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| End bp | 1288007 |
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| Gene Length | 1467 bp |
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| Protein Length | 488 aa |
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| Translation table | 11 |
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| GC content | 75% |
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| IMG OID | 640580690 |
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| Product | RND efflux system outer membrane lipoprotein |
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| Protein accession | YP_001261647 |
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| Protein GI | 148554065 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 0.268118 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.678051 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCCTGA GTCGCGCGCC TTTCCTTCGC CCTGCCGCCG TGGTCGGCCT TCCGATCGCG
CTGGCCGCCT GCGCATCGAT ACCCGATCTC GGCGCCCGGC CGGAGCTGCG CACGCCCGCG
AGCGTCGCCG CCGGCCAGAG CCTGGGCGGG CGGACCGACG CCGACTGGCC CGCCGACGGC
TGGTGGCAGG CCTATGGCGA CCCGCAGCTC GCCGGGCTGA TCGAGGAAGG GCTGCGCGAA
TCCCCCGACG CCGCCGCTGC CGCCGCGCGC TTCCGCCAGG CGCGGGGCAT GGCGCAGGCG
GCCGGCGCGC CGCTGCTGCC CTCGGTCGGC GCCGGCGCCA GCGCGGGCCT GGAGAAGCAG
AGCTACAATG TCGGCATCCC CGCGCAGTTC GTGCCCAAGG GATGGCAGGA CGTCGGGCAG
GCCTCGATCG ACCTGTCGTT CGACCTCGAC CTGTGGGGCC GCAACCGCGC GGCGCTCGCC
GCCGCCACCT CCGAGGCCGA GGCGGCACGG ATCGAGCAGG ACCAGGCGCG GCTCATGCTC
GCGACCGGGA TCGCCTCGGC CTATGCCGAC CTCGCCCGGC TCCATGCCGA GCGCGACGTG
CTGGCGGCGG CGGTCGAGCT GCGCGCCGCC ACGCGCAAGC TGGTCGGCGA CCGGGTCCGC
AACGGCCTCG ACACGCGCGC CGAGCTGAAG CAGGCCGACG CGGCGGTGCC GGCGGCCCGT
GCCGACCTCG CCGCCGCCGA CGAGGCGATC GCGCTGGTCC GCAACCAGAT CGCCGCACTG
GTCGGCGCCG GGCCCGATCG CGGCCTGGGG ATCGCCCGGC CCGCGCTCGC GGCGCTCCAC
CCGCCGGGCC TGCCGGCGCA GGTGACCACC GAGCTGATCG GCCGCCGCCC CGACATCGCC
GCCGCGCGGG CGCAGGCCGA GGCCGCCGCG AGCCGGATCA AGGTCGCGCG GGCCGACTTC
TTCCCCGCCA TCCGGCTCGG CGCGCTGGTC GGTGTCCGCT CGCTCGGCCT CGACCAGCTG
ACCGACAGCG GATCGACCTA TGGCAACGTC ACCCCGGCGG TCAGCCTGCC GATCTTTCGC
GGCGGGGCGC TGAGCGGCCA GTATCGCGGC GCGCGCGGCC GCTATGACGA GGCGGTGGCG
CTCTACAACC GGGCGGTGAT CGCGGCCTAT CGCGAGGTCG CCGACGCGGT GACCAGCCAG
CGCGCCGCCA CCGACCGGCT CGCCCAGTCG CGCCAGGCGC TGGCCGATTC CGAAGAGGCC
TATGCGATCG CCCGCAAACG CTATGAAGGC GGCCTGTCCA CCTATCTCAA CGTGCTGAGC
TCCGAGGAGA AGCTGCTACA GGCGCGCCGC GCGGTCGCCG ATCTCGATGC CCGGATGTTC
GCGCTGGACG TCGCCCTCGT CCGCGCCCTC GGCGGCGGTT TCACCGCCGC GTCCCCTGCC
CTCGCCAAGG ACGATTCCCA TGGCTGA
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| Protein sequence | MPLSRAPFLR PAAVVGLPIA LAACASIPDL GARPELRTPA SVAAGQSLGG RTDADWPADG
WWQAYGDPQL AGLIEEGLRE SPDAAAAAAR FRQARGMAQA AGAPLLPSVG AGASAGLEKQ
SYNVGIPAQF VPKGWQDVGQ ASIDLSFDLD LWGRNRAALA AATSEAEAAR IEQDQARLML
ATGIASAYAD LARLHAERDV LAAAVELRAA TRKLVGDRVR NGLDTRAELK QADAAVPAAR
ADLAAADEAI ALVRNQIAAL VGAGPDRGLG IARPALAALH PPGLPAQVTT ELIGRRPDIA
AARAQAEAAA SRIKVARADF FPAIRLGALV GVRSLGLDQL TDSGSTYGNV TPAVSLPIFR
GGALSGQYRG ARGRYDEAVA LYNRAVIAAY REVADAVTSQ RAATDRLAQS RQALADSEEA
YAIARKRYEG GLSTYLNVLS SEEKLLQARR AVADLDARMF ALDVALVRAL GGGFTAASPA
LAKDDSHG
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