Gene Swit_1142 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwit_1142 
Symbol 
ID5196354 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSphingomonas wittichii RW1 
KingdomBacteria 
Replicon accessionNC_009511 
Strand- 
Start bp1285817 
End bp1286449 
Gene Length633 bp 
Protein Length210 aa 
Translation table11 
GC content68% 
IMG OID640580689 
ProductTetR family transcriptional regulator 
Protein accessionYP_001261646 
Protein GI148554064 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value0.282615 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.594609 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCTGCG AGAGGACCAG GCCCGGCCGC CGCGAGACGA AGCGGCTCGA TCGCCGCGAA 
GCGATCATCG GCGTCGCGCA TGCCTATTTC CTGCAGCATG GCTATGCGGC GACGACGATG 
TCGGGGATCG CGGCGACGAT CGGCGGCTCC AAGGCGACGC TGTGGAGCTA TTTCCCGTCC 
AAGGAAGCGC TGTTCGAGGC GGTGCTCGAC CGCGCGACCG CCCATTTCCG GGAGCGGATC 
ATCTCGGTGC TGGTTCCGGA GGCGGACCTC GAAACGACGC TCCGCAGCTT CTGCCGCCAT 
TTCCTCGAAA AGGTGACGAG CCCCGAGGCC ATCGCGCTCC ATCGCCTGAT CGTGGCGGAG 
GCGGGGCGCG TGCCGGAGAT CGGCGAGATG TTCTACCAGC GTGGGCCGAA CACGATGATC 
CGGCTGCTGG GTGATTTCAT CGAGCTCGGC ATGGCGCGCG GCAAGCTGCG GCCGGACGAT 
CCCCGGAAGG TGGCGAAGCT GCTGCTGGCC CTGTGCCTGC AGGGCGATCA CCAGCAGGTG 
CTGCTGGGGC GGATCGACCG GGTCGACGCC GCGCGGATCG CGGCCACCGC CGACACCGCC 
GTCGATTTTC TTCTCCGCGC CTACGCTCCC TGA
 
Protein sequence
MTCERTRPGR RETKRLDRRE AIIGVAHAYF LQHGYAATTM SGIAATIGGS KATLWSYFPS 
KEALFEAVLD RATAHFRERI ISVLVPEADL ETTLRSFCRH FLEKVTSPEA IALHRLIVAE 
AGRVPEIGEM FYQRGPNTMI RLLGDFIELG MARGKLRPDD PRKVAKLLLA LCLQGDHQQV 
LLGRIDRVDA ARIAATADTA VDFLLRAYAP