| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_1119 |
|---|
| Symbol | |
|---|
| ID | 5198731 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | - |
|---|
| Start bp | 1262127 |
|---|
| End bp | 1265717 |
|---|
| Gene Length | 3591 bp |
|---|
| Protein Length | 1196 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 640580666 |
|---|
| Product | DNA polymerase III, alpha subunit |
|---|
| Protein accession | YP_001261623 |
|---|
| Protein GI | 148554041 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0587] DNA polymerase III, alpha subunit |
|---|
| TIGRFAM ID | [TIGR00594] DNA-directed DNA polymerase III (polc) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.0282531 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.883779 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGCCG AGGCCGTCCC CTTCGCCGAA ATGGTCGCGG CGACCAATTA CAGCTTCCTG
CGCGGCGCCT CCGCTGCGGC GGACATGGTC GCGGCGGCGA GGGCGGCGGG CCATGCCGGC
ATCGGCATCG CCGACCGCAA CAGCGTCGCC GGGGTGGTGC GGGCGTGGGA CGCGGTCCGC
AAGGCGCGCG AGGAGGCCAG GAAGGCAGGT CATGCCGACC TCGCCTTCAA GCTGGCGACG
GGCGCGCGGC TGGTGTTCGT CGACGGGACG CCCGACATCG TCGCCTATCC CGCGACCCGG
CGCGGCTGGG GCCGGCTGAC CCGGCTGCTG ACCACCGGCA ACCGCCGCGC GATCAAGGGC
GACTGCATCC TCTTCCTCGA CGACCTGCTC GGCCATCTCG ACGACCTGCT GCTGATCGTG
ATTCCGGGCG GCGAGGGGCT GGTGCTGGGC GAGGAAGGCG CGCGGCCGCA TCCGACATGG
GATGGCTCCA TGCCGTCATT CCCGCGAAAG CGGGAATCCA TGGACGGCGG TTCGCTGGAA
CCGGAGCGCT CCGTGACCGT GGATTCCCGC TTTCGCGAGA ATGACGGAGA GAAAAGGGAG
GAAATCTTTC CACCGTCGCC CCAGCGAAGG CTGGGGCCCA TGTCTCTCGT CACGGTCGAT
GGGGTTCGGG TGGAGGACGA TCCGTCCCCG GCGGCATCGT GCGAGAGGAC AGACATGGAT
CCCAGCCTTC GCTGGGATGA CGCGGTGAGG AGGGCGCTTT CCATCCTCAA GCGCGCCGCG
CCCGATCGGG TCTGGCTGGG CTTGTCCATG CCCTATTCGG GACGCGACCG GCGGCGGATC
GCCACCTATG CGCGGCTGGC GAAGGAGGTC GGCGTCCCGC TCCTCGCCAC CAACGACGCG
CTCTACGCCA CGCCCGGCCA GCGGCCGCTC CACGATGTCG TCACCTGCAT CCGCCTCGGC
CTCACGCTCG ACGAGGCGGG GACGCGGCTG GCCGCCAATG GCGAACGGCA CCTCAAGCCC
GGTCATGAGA TGGCGCGGCT GTTCGTCGAT CATCCGCAGG CCGTCGCCGC AGGCGTCGCG
CTGCTCGATC GGATCGATTT CGACCTCAAG CAATTGAAAT ATGAATATCC GCACGAGCCC
GTTCCCGAAG GCTGGACCCC GCAGGGCTGG CTCGAGCATC TGGTCGAGAA GGGCATAGCC
TGGCGCTACG GCCCGAACCC CGAACAGAAG GTGCTCGACC TGGTCGAGAC CGAGCTGAAG
CTCGTCCGCG ACGCGCGCTA TGCCTATTAT TTCCTGACCG TCCATGACGT GGTCGCCTTC
GCGCGCGGCG AGAAGATCCT CTGCCAGGGA CGGGGATCGG CGGCCAATTC GGTGATCTGC
TACGTCCTCG GCATCACCGA GGTCGATCCG GTCCATAACA AGCTGCTCTT CTCGCGCTTC
ATCTCGGAGG ACCGCAACGA GCCGCCCGAC ATCGACGTCG ATTTCGAGCA TGAGCGGCGC
GAGGAGGTGA TGCAGCATGT CTATGCGCGC TATGGCCGCC ACCGCGCCGG CATCGCCGCC
ACCGTCATCC ACTACCGCCC ACGCAGCGCG GTGCGCGAGA TCGCCAAGGT GCTGGGCCTC
AGCGAGGACG TCGCGGCGAA ACTGACCTCG ACCATCTGGG GCAGCTATGC CGCGACGATG
GAGGGCAAGC GCTTCCACGA GACCGGCTTC GACCCCGGCA ATGTCGAGAT CGCCCGGCTC
AACATGCTCG TCGAGCAGCT GCTGACCTTC CCGCGCCATC TGTCGCAGCA TGTCGGCGGC
TTCGTGCTGA CCGAGGACCG GCTCGACGAG ACGGTGCCGA TCCACAATGC CGCGATGGAC
GACCGCACCT TCATCGAATG GGACAAGGAC GACATCGACG CGCTCGGGCT GATGAAGGTC
GACGTGCTGG CGCTCGGCAT GCTGACCTGC ATCCGCAAGG CGTTCGCGCT GATCCAGGCG
CACACCGGCA CCGAATATAC GCTCGCGACG ATCCCGAAGG AGCGGAAAGA GGTCTACGAC
ATGCTGTGCA AGGGCGACAG CATCGGCGTC TTCCAGGTCG AGAGCCGCGC CCAGATCAAC
ATGCTGCCGC GGCTGCGGCC GCGAACGCTC TACGATCTCG TCGTGCAGGT CGCGATCGTC
CGGCCGGGGC CGATCCAGGG CGGCATGGTC CATCCCTATC TCAAGCGCCG CAAGGAGGAG
CGCGAGGGGA GGCTCGTCAT CGACTATCCG GGGCCGAAGG GACCGGACGG CGCGCCCGAG
CTCGAAGACG TGCTCAGCAA GACCCTCGGC GTCCCGCTGT TCCAGGAACA GGCGATGAAG
CTGGCGATCG TCGCCGCCAA ATTCACCGAT GGCGAGGCCA ACCAGCTCCG CCGCGCGATG
GCGACCTTCC GCCATGTCGG CACCATGCCG GAGTTCGAGG GCAAGATGGT CGAGGGGATG
GTCGCGCGCG GCTATCCGCG CGACTTCGCC GAGCGCTGCT TCGCCCAGAT CAAGGGTTTC
GGCAGCTACG GCTTTCCCGA AAGCCATGCC CAGTCCTTCG CGCTGCTCGT CTATGCTTCC
TCCTACATCA AGTGCCGTTA TCCGGCGGTG TTCGCCTGCG CGCTGCTCAA TTCGCAGCCG
ATGGGCTTCT ACGCCCCGGC GCAGATCGTC CGCGACGCGC GCGAGCATGG GGTCGAGGTG
CGCGCGGCCG ACGTCAACCG CAGCGGCTGG GACAACAGCC TCGAAGGGCC GCCCGGCCGG
CTCGCGCTGC GGATCGGGCT GCGCCAGGTC GAGGGCTTCC GCCAGGCCTG GGCCGACGAG
ATCGCCAAGG TGCGGGGGCA AGGGGCTTTC GCCAGTATCG AGGAGCTGGC CCGCCGGGCG
AAGCTGCCGC GCCGCGCGCT ACGCCTGCTC GCCGACGCCG ACGCCTTCCG CTCGCTCGGG
CTCGACCGGC GCGCGGCCCT GTGGGAGGCG CGCCGCACCC CCGACGGTGA ACTGCCGCTG
TTCGCCGCGG CCAAGGCGCG CGAACTGGGC GAGGAGCCCG ATGCGATGCT GCCGGCGATG
CCGCTGTCCG AGCATGTCGC CGCCGATTAC CAGATGACCC GGCTGTCGCT CAAAGGCCAT
CCGATGCAGT TCCTGCGCGA CGTCTTCCGC CGCGAGGGCG TGCTGAGCTG CGCCGAGGTC
GCCCAGGCGA AGAACGGCCG CCGCGCCAAG GTGGCGGGGG TGGTGCTGGT CCGCCAGCGG
CCGGGCGAGG GCAAGGCGAT CTTCATCACC CTGGAGGACG AGACCGGGAT CACCAACGTC
CTGCTCTGGG CGCGGACCTT CGAGGTGCAG CGCCGGCAGG TGATGGCGTC GCGACTGATG
GTGGTGGAGG GCGAGATCCA GAAGAGCCCT GAAGGCGTCG TCCACCTGAT GGGCGCGATC
GTCGACGACC GCACCGCCGA GCTCGACCGG CTGTCGGAGG ATCACCGCGC GACGATCGAG
TTGCTGCCCG CCGACGTGTT CGAGCATCCC CAGCCACCCC GCGACCATGT CCCGCGCGGC
AGCCACCCGC GCAACGTCCG CATCCTGCCG AAGTCGCGCG ATTTCCATTG A
|
|---|
| Protein sequence | MSAEAVPFAE MVAATNYSFL RGASAAADMV AAARAAGHAG IGIADRNSVA GVVRAWDAVR
KAREEARKAG HADLAFKLAT GARLVFVDGT PDIVAYPATR RGWGRLTRLL TTGNRRAIKG
DCILFLDDLL GHLDDLLLIV IPGGEGLVLG EEGARPHPTW DGSMPSFPRK RESMDGGSLE
PERSVTVDSR FRENDGEKRE EIFPPSPQRR LGPMSLVTVD GVRVEDDPSP AASCERTDMD
PSLRWDDAVR RALSILKRAA PDRVWLGLSM PYSGRDRRRI ATYARLAKEV GVPLLATNDA
LYATPGQRPL HDVVTCIRLG LTLDEAGTRL AANGERHLKP GHEMARLFVD HPQAVAAGVA
LLDRIDFDLK QLKYEYPHEP VPEGWTPQGW LEHLVEKGIA WRYGPNPEQK VLDLVETELK
LVRDARYAYY FLTVHDVVAF ARGEKILCQG RGSAANSVIC YVLGITEVDP VHNKLLFSRF
ISEDRNEPPD IDVDFEHERR EEVMQHVYAR YGRHRAGIAA TVIHYRPRSA VREIAKVLGL
SEDVAAKLTS TIWGSYAATM EGKRFHETGF DPGNVEIARL NMLVEQLLTF PRHLSQHVGG
FVLTEDRLDE TVPIHNAAMD DRTFIEWDKD DIDALGLMKV DVLALGMLTC IRKAFALIQA
HTGTEYTLAT IPKERKEVYD MLCKGDSIGV FQVESRAQIN MLPRLRPRTL YDLVVQVAIV
RPGPIQGGMV HPYLKRRKEE REGRLVIDYP GPKGPDGAPE LEDVLSKTLG VPLFQEQAMK
LAIVAAKFTD GEANQLRRAM ATFRHVGTMP EFEGKMVEGM VARGYPRDFA ERCFAQIKGF
GSYGFPESHA QSFALLVYAS SYIKCRYPAV FACALLNSQP MGFYAPAQIV RDAREHGVEV
RAADVNRSGW DNSLEGPPGR LALRIGLRQV EGFRQAWADE IAKVRGQGAF ASIEELARRA
KLPRRALRLL ADADAFRSLG LDRRAALWEA RRTPDGELPL FAAAKARELG EEPDAMLPAM
PLSEHVAADY QMTRLSLKGH PMQFLRDVFR REGVLSCAEV AQAKNGRRAK VAGVVLVRQR
PGEGKAIFIT LEDETGITNV LLWARTFEVQ RRQVMASRLM VVEGEIQKSP EGVVHLMGAI
VDDRTAELDR LSEDHRATIE LLPADVFEHP QPPRDHVPRG SHPRNVRILP KSRDFH
|
|---|
| |