Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swit_1109 |
Symbol | |
ID | 5199637 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingomonas wittichii RW1 |
Kingdom | Bacteria |
Replicon accession | NC_009511 |
Strand | - |
Start bp | 1247240 |
End bp | 1248484 |
Gene Length | 1245 bp |
Protein Length | 414 aa |
Translation table | 11 |
GC content | 74% |
IMG OID | 640580656 |
Product | RNA polymerase ECF-subfamily sigma factor |
Protein accession | YP_001261613 |
Protein GI | 148554031 |
COG category | [K] Transcription |
COG ID | [COG4941] Predicted RNA polymerase sigma factor containing a TPR repeat domain |
TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | 32 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGACCGACC TCGCCTGGAT CGACGCGGCG CTGGCGTCGG CCCGGCCGCG CGCGGTGGCC GCGCTGCTCC GCTATTTCCG CGACATGGAC CTGGCCGAGG AGGCCTATCA GGAGGCCTGC CTGCGCGCGC TGGCGCGCTG GCCCGAGCAG GGGGCGCCGC GCGATCCCGC CGCCTGGCTG ATCCTGGTCG GCCGCAACAG CGGAATCGAC GCGGTGCGCA AGGCGGCGCG GACCGAGGCG CTGCCGCCCG AGGACCAGCT TTCCGACCTC GACGATGCCG AGGCCGGGCT CGCCGACCGG CTCGACGAGG GCCAGTATCG CGACGACATA TTGCGGCTGC TGTTCGTCTG CTGCCATCCC GACCTGCCCG CCACCGGCGC GATCGCGCTG GCGCTGCGCA TCGTCTCCGG CCTGACCGTG GCGCAGATCG CGCGCGCCTT CCTGGTCGGC GAGAAGGCGA TGGAGCAGCG CATCACCCGC GCCAAGGCGC GCATCGCCGA CAGCGGCGTG GCGTTCGAGA CGCCGGGGCC GATCGAGCGG GCCGAGCGGC TGGGGGCGGT CGCCGCAATG GTCTACCTGA TCTTCAATGA AGGCTATTCG GCGAGCGGCG CGGAGGCCGG CGCGCGCGAG CCGCTGTGTC GCGAGGCGAT CCGGCTCGGC CGGCTGCTGC TGCGGCTGTT CCCGTCCGAG CCCGAGATCC TCGCGCTGAC CGCGCTGATG CTGCTCCAGC ATGCGCGCAG CGCGGCGCGG CTCGACGGGG AGGGGCAGGT CGTCCTGCTC GAGGACCAGG ATCGCGGCCG CTGGGACGGC GCGATGATCG CCGAGGGGCT GGCGCTGCTC GACAAGGCGA TGCGGCATCG CCGGCCCGGC CCCTATCAGG TGCAGGCGGC GATCGCGGCG CTCCACGCGC GGGCGAAGAC CGCCGCCGAC ACCGACTGGG CCGGGATCGA GCGGCTCTAT GCGACGCTCG AACGGATGCA GCCCTCGCCG GTGGTGACGC TCAACCGGGC GGTCGCGCTC GGCCGGCTGT CGGGGCCCGA GGCGGCGCTC GACCTGATCG CGCCGCTCGG CGAACGGCTC GACGGCTATT TCTATTATCA TGGCGCGCGC GGCGCCTTCC TCGATCAGCT CGGCCGGGCG GAAGAGGCGC GCGCCGCGTT CGTCCGGGCG ATCGGCCTGG CCGGCTCGGC GGCGGAGGCG GCCTATATCC GCCAGCAGCT CGATCGGCTA TCGCAGCCCA AATAG
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Protein sequence | MTDLAWIDAA LASARPRAVA ALLRYFRDMD LAEEAYQEAC LRALARWPEQ GAPRDPAAWL ILVGRNSGID AVRKAARTEA LPPEDQLSDL DDAEAGLADR LDEGQYRDDI LRLLFVCCHP DLPATGAIAL ALRIVSGLTV AQIARAFLVG EKAMEQRITR AKARIADSGV AFETPGPIER AERLGAVAAM VYLIFNEGYS ASGAEAGARE PLCREAIRLG RLLLRLFPSE PEILALTALM LLQHARSAAR LDGEGQVVLL EDQDRGRWDG AMIAEGLALL DKAMRHRRPG PYQVQAAIAA LHARAKTAAD TDWAGIERLY ATLERMQPSP VVTLNRAVAL GRLSGPEAAL DLIAPLGERL DGYFYYHGAR GAFLDQLGRA EEARAAFVRA IGLAGSAAEA AYIRQQLDRL SQPK
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