| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_1096 |
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| Symbol | |
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| ID | 5198823 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009511 |
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| Strand | - |
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| Start bp | 1230859 |
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| End bp | 1232343 |
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| Gene Length | 1485 bp |
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| Protein Length | 494 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 640580642 |
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| Product | TolC family type I secretion outer membrane protein |
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| Protein accession | YP_001261600 |
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| Protein GI | 148554018 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
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Plasmid Coverage information |
| Num covering plasmid clones | 33 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.739146 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAAACGCA AGCTTCGCGG AGCGGCCGCC GGCCGCTGGA CTGTGTCCGT CGCAGCGCTG
GTGTCGGTCG GGTTCGGCAC GCCGGCGGCG GCCGACACGC TGCGCGAAGC GCTGGGCCTG
GCCTATCAGA GCAATCCGAC GCTGACCGGC GCCCGCGCCG GCCTGCGCGC CACCGACGAG
GATGTCGGCA TCGCCCGCGC CCAGGGCCTG CCCGACGTCA GCGCCACCGG CTCCTATAAC
GAGTTCGTCA AGCGGTCGGC CAACGCCTTC ACCCAGCCGA AGCGCTCGCT CGGCGGATCG
GCGACCGTGT CGGTGCCGAT CTACCAGGGG GGTTTCGTCC GCAACTCGAT CCGCGCGGCG
AAGGCGCGGG TGGAGCAGGG CCGCGCCGGC CTGCAGGCGA CCGAGAGCGA CATCTTCACC
CAGACGGTCG CGGCCTATAT GGACGTGATC CGCGACACCG CGATCGTCGA TCTCAACGCC
GGCAATGTGA AGGTGCTGGA GACCAATCTC CAGGCGAGCC AGGACCGCTT CCAGGTCGGC
GACCTCACCC GCACCGACGT CGCCCAGTCG GAGGCGCGCC TCGCCGGCGC GCGCGCCAAC
CTCCGCACCG CGCAGGCGCA GCTCGACGCG AGCCGCCAGA CCTATCTGGA AGTGGTCGGC
AAATTCCCCG ACGCGCTCGA AACGCCGCCG GCGCTGCCGG GGCTGCCTTC GACCTCGGAA
GACGCGGTCG ACATCGCCGT CACCAACAAT CCCGACCTCG CCTCCGCCCG GCAGGCGACC
CGCGCCGCCC AATATGACAT CGGCGTGGCC GAGGCGTCGC GCATGCCGCG GCTCAACGCG
GTCGGCACCG GCGACTATGT CGACTATCGC GGCACGCTGG CCGGCGGCGC CGCCGGCGTC
CGCCAGGTCG ACAAGACCGC GACGGTGAGC CTGCAGCTCC AGGTGCCGAT CTACCAGGGC
GGCGGCCCCG CCGCGCAGGT CCGTCAGGCG CAGGCGCGCA AGAGCCAGGC GATCGAGAAC
CAGACCGCGG TCGAGCGGGC GGTGATCGCC GACGCGCGGG TCGCCTTCGC CCGTTACGAA
GCGGCGCTCG GGGTGATCGA TTCCTCGGTG TCGGCGGTGT CCGCCAACGA GCTGGCGCTC
GAAGGCGTGC GCGCCGAGCA GAGCGTCGGC AACCGCAACC TGCTCGACGT GCTCAATGCC
GAGCAGGAGC TGCTCAACTC GCGCTCGACC CTCGTCTCGG CGAAGCGCGA CGCCTATGTC
GCCGGCTTCG CGCTGATCGC GGCGATGGGG CGCGCGCAGG CGAAGGACCT CGGCCTCGAC
GGCGGCGCGC TCTACGATCC GGTCGCCAAT TACCGCCGGG TCCATGGCCG CATCTGGGAC
TGGGACAGCG ATCCCCGGCC GAAGCCGGTC GCGACCTCGA CCCTGAAGGA GCCGAGCGTT
TCGGCGGTGC CGACGCACAG CCTGGTGGAA AGCCCGGCGA AATAG
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| Protein sequence | MKRKLRGAAA GRWTVSVAAL VSVGFGTPAA ADTLREALGL AYQSNPTLTG ARAGLRATDE
DVGIARAQGL PDVSATGSYN EFVKRSANAF TQPKRSLGGS ATVSVPIYQG GFVRNSIRAA
KARVEQGRAG LQATESDIFT QTVAAYMDVI RDTAIVDLNA GNVKVLETNL QASQDRFQVG
DLTRTDVAQS EARLAGARAN LRTAQAQLDA SRQTYLEVVG KFPDALETPP ALPGLPSTSE
DAVDIAVTNN PDLASARQAT RAAQYDIGVA EASRMPRLNA VGTGDYVDYR GTLAGGAAGV
RQVDKTATVS LQLQVPIYQG GGPAAQVRQA QARKSQAIEN QTAVERAVIA DARVAFARYE
AALGVIDSSV SAVSANELAL EGVRAEQSVG NRNLLDVLNA EQELLNSRST LVSAKRDAYV
AGFALIAAMG RAQAKDLGLD GGALYDPVAN YRRVHGRIWD WDSDPRPKPV ATSTLKEPSV
SAVPTHSLVE SPAK
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