Gene Swit_1081 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwit_1081 
Symbol 
ID5199659 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSphingomonas wittichii RW1 
KingdomBacteria 
Replicon accessionNC_009511 
Strand
Start bp1210136 
End bp1212340 
Gene Length2205 bp 
Protein Length734 aa 
Translation table11 
GC content63% 
IMG OID640580626 
ProductTonB-dependent receptor 
Protein accessionYP_001261585 
Protein GI148554003 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG1629] Outer membrane receptor proteins, mostly Fe transport 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGCGAA GCGTCAGCAT CATCACCATC CGCAAGCCGC TGCTTGCCGC GTCCGCCGCG 
GCGATCGCCA TGACCACATC GGCGGCGCAC GCGCAGAGCG AACCGGCAGC CGAAGGCTCT
GGCGACATCA TCGTCACGGC ACAGAAGCGC GCAGAGCGCC TGCAGGACAC GCCGGTTCCG
ATCACCGCCA TCAACACCGC CGAGCTCGCC GACCACGGAG TGTCGCGGCT CCAGGATTAT
TTCAGCCAGG TGCCGGGCCT CAGCCTCAAC GCGCAGGGCA ACGGCAAGAC CAACATCATC
ATCCGCGGCA TCACCACCGC CGTGTTCGGC AATCCGACCG TCGCGGTGTC GATTGACGAC
GTACCCTTCG GAGCGACCAA CGCGACGGCC GACGGACAGC TCGTCCAACC CGATCTCGAT
CCCGCGGATC TTGAGCGGGT CGAGGTTCTG CGCGGGCCGC AGGGCACGCT TTACGGCGCC
TCCAGTCTTG GCGGCCTCAT CAAATATGTC ACCAGGGATC CGTCGACCGA GGCCGTGTCG
GGCCGTGTCC AGGGCGACGT CAATACGGTG CGCAAGGGCG AGGCGGGCTA CGCGCTGCGC
GGATCGGTCA ATCTGCCGCT GAGCGATACG GTGGCGGTCC GCGCCAGCGG CCATATGCGG
CGTTCGCCTG GCTATGTCGA CAATGTGCTG TCGGGCCAGA AGGATGTGAA CACCGTCGAC
GTCTATGGCG GCCGCGTCGC GATGATGCTG AAGCCCAATG AGCGGATCAA GGTCAGGCTT
GCGGTGCAGC ATCAGGATAC GCGCGGCGAC GGGACCGCGC GGACCACGAC CAATTTCTCG
CTGGAGCCGA CGTTCGGCGA TCTCAAGCAG CGCTATCTGC CCGACAGCGG CATGTTCCAC
ACGCGCAGCA CGCTCGCGAC GGCCAACATC GATCTCGATT TCGATGACGT GACGATCACG
TCGGTGACCG GCTATGGCCG CAACAGGAAC CAGGAGCGGT CAGACTTCTC GCGCAGCGTC
GGTGAACCCG CCGCCGAGCT CGCAAACGAC ATGCGAACAA GGAAGTTCAC CCAGGAAATC
CGTTTTGCGG GCCAGTCCGG AAAGCCGGTC GAATGGATGC TCGGCGGCTT CTACACGAAG
GAGAAGAGCT CGAGCTTCCA GAAGATCGAG CGGGTCACGC CGATCACCGG TGCACCGGTC
GCGCCCGCGC AGACCAATAT CTTCACCGCG GACTTCCCGA CCTCCTACGA GGAACTGGCG
GCCTTCGGTT TCGTGACCGT GAATTTCACC TCGAAGTTCA ACATACAAGG CGGCATGCGC
TACAGCGGCA ACCGCCAGAC GATCTTCGAG CTCGACAGCG GCGAGTTTGC CGGCACGTTG
CCAGGGCAGC CGCCGGTCAT CACCGCCGAT ACCGCAGCCA GCGACGAGTC CTTCACCTTC
CTGGTGGTAC CGCAATATAA ATTCAGCCCG GACCTGATGG CCTATGCGCG GGTCGCATCG
GGATATCGGC CGGGAGGCCC CAACGGCGCG ATCTTCAGTG ATCCGACGCT TCCGAAGAGC
TTCAAGGCCG ATACCACGAT GAACTATGAG GCGGGGGTCA AGGGCAACCT GTTCGACCGG
CACGTCACCT TCGACGTCTC GGCTTATTAT ATCGACTGGA GCAAGGTCCA CCTCCAACTG
ATCATCAGCG GCCTCTCCAT TTTCACCAAT GGCGGTAAAG CGAGCAGCAA GGGCATTGAA
GGCTCCTTCC AATATCACAA TGACAGCGGG CTAACGATCG CGGCGAACGG CAGCTACGGC
GTCGCCAGAC TCGAAGAGGA TCCGCCGGCG GCAATCCCGG CCGACAAGGG CACGCGGCTG
CCGTTCAGCC CCAAGTTCAG CGGCAGCCTG TCGATCGACC AGGATTTCGA CATTATGGAG
GACTGGAAGG CGAGTGTCGG CGGCACGGTC GCCCATGTTG GTCGACGCTT CGGTCCGTTC
CAGCCGGTGG CGTCGCGGCT CAACCTGCCG TCCTACACGA CCGTTGATCT GCGGATCGGC
GCCAGGAATG ACGACTGGTC GATCACCGCC TATGTACGCA ACGTCGCCGA CAAGCGTGGC
GTCCTGTCGG CCGCGGCCGA AGGATCGCAG GCGGTCACGG GCGTGTTTGG CGTCAACTAT
GTCCAGCCAC GTACCATCGG CCTGTCGGTA GCGCGCAGCT TCTGA
 
Protein sequence
MKRSVSIITI RKPLLAASAA AIAMTTSAAH AQSEPAAEGS GDIIVTAQKR AERLQDTPVP 
ITAINTAELA DHGVSRLQDY FSQVPGLSLN AQGNGKTNII IRGITTAVFG NPTVAVSIDD
VPFGATNATA DGQLVQPDLD PADLERVEVL RGPQGTLYGA SSLGGLIKYV TRDPSTEAVS
GRVQGDVNTV RKGEAGYALR GSVNLPLSDT VAVRASGHMR RSPGYVDNVL SGQKDVNTVD
VYGGRVAMML KPNERIKVRL AVQHQDTRGD GTARTTTNFS LEPTFGDLKQ RYLPDSGMFH
TRSTLATANI DLDFDDVTIT SVTGYGRNRN QERSDFSRSV GEPAAELAND MRTRKFTQEI
RFAGQSGKPV EWMLGGFYTK EKSSSFQKIE RVTPITGAPV APAQTNIFTA DFPTSYEELA
AFGFVTVNFT SKFNIQGGMR YSGNRQTIFE LDSGEFAGTL PGQPPVITAD TAASDESFTF
LVVPQYKFSP DLMAYARVAS GYRPGGPNGA IFSDPTLPKS FKADTTMNYE AGVKGNLFDR
HVTFDVSAYY IDWSKVHLQL IISGLSIFTN GGKASSKGIE GSFQYHNDSG LTIAANGSYG
VARLEEDPPA AIPADKGTRL PFSPKFSGSL SIDQDFDIME DWKASVGGTV AHVGRRFGPF
QPVASRLNLP SYTTVDLRIG ARNDDWSITA YVRNVADKRG VLSAAAEGSQ AVTGVFGVNY
VQPRTIGLSV ARSF