Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swit_1081 |
Symbol | |
ID | 5199659 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingomonas wittichii RW1 |
Kingdom | Bacteria |
Replicon accession | NC_009511 |
Strand | + |
Start bp | 1210136 |
End bp | 1212340 |
Gene Length | 2205 bp |
Protein Length | 734 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 640580626 |
Product | TonB-dependent receptor |
Protein accession | YP_001261585 |
Protein GI | 148554003 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGCGAA GCGTCAGCAT CATCACCATC CGCAAGCCGC TGCTTGCCGC GTCCGCCGCG GCGATCGCCA TGACCACATC GGCGGCGCAC GCGCAGAGCG AACCGGCAGC CGAAGGCTCT GGCGACATCA TCGTCACGGC ACAGAAGCGC GCAGAGCGCC TGCAGGACAC GCCGGTTCCG ATCACCGCCA TCAACACCGC CGAGCTCGCC GACCACGGAG TGTCGCGGCT CCAGGATTAT TTCAGCCAGG TGCCGGGCCT CAGCCTCAAC GCGCAGGGCA ACGGCAAGAC CAACATCATC ATCCGCGGCA TCACCACCGC CGTGTTCGGC AATCCGACCG TCGCGGTGTC GATTGACGAC GTACCCTTCG GAGCGACCAA CGCGACGGCC GACGGACAGC TCGTCCAACC CGATCTCGAT CCCGCGGATC TTGAGCGGGT CGAGGTTCTG CGCGGGCCGC AGGGCACGCT TTACGGCGCC TCCAGTCTTG GCGGCCTCAT CAAATATGTC ACCAGGGATC CGTCGACCGA GGCCGTGTCG GGCCGTGTCC AGGGCGACGT CAATACGGTG CGCAAGGGCG AGGCGGGCTA CGCGCTGCGC GGATCGGTCA ATCTGCCGCT GAGCGATACG GTGGCGGTCC GCGCCAGCGG CCATATGCGG CGTTCGCCTG GCTATGTCGA CAATGTGCTG TCGGGCCAGA AGGATGTGAA CACCGTCGAC GTCTATGGCG GCCGCGTCGC GATGATGCTG AAGCCCAATG AGCGGATCAA GGTCAGGCTT GCGGTGCAGC ATCAGGATAC GCGCGGCGAC GGGACCGCGC GGACCACGAC CAATTTCTCG CTGGAGCCGA CGTTCGGCGA TCTCAAGCAG CGCTATCTGC CCGACAGCGG CATGTTCCAC ACGCGCAGCA CGCTCGCGAC GGCCAACATC GATCTCGATT TCGATGACGT GACGATCACG TCGGTGACCG GCTATGGCCG CAACAGGAAC CAGGAGCGGT CAGACTTCTC GCGCAGCGTC GGTGAACCCG CCGCCGAGCT CGCAAACGAC ATGCGAACAA GGAAGTTCAC CCAGGAAATC CGTTTTGCGG GCCAGTCCGG AAAGCCGGTC GAATGGATGC TCGGCGGCTT CTACACGAAG GAGAAGAGCT CGAGCTTCCA GAAGATCGAG CGGGTCACGC CGATCACCGG TGCACCGGTC GCGCCCGCGC AGACCAATAT CTTCACCGCG GACTTCCCGA CCTCCTACGA GGAACTGGCG GCCTTCGGTT TCGTGACCGT GAATTTCACC TCGAAGTTCA ACATACAAGG CGGCATGCGC TACAGCGGCA ACCGCCAGAC GATCTTCGAG CTCGACAGCG GCGAGTTTGC CGGCACGTTG CCAGGGCAGC CGCCGGTCAT CACCGCCGAT ACCGCAGCCA GCGACGAGTC CTTCACCTTC CTGGTGGTAC CGCAATATAA ATTCAGCCCG GACCTGATGG CCTATGCGCG GGTCGCATCG GGATATCGGC CGGGAGGCCC CAACGGCGCG ATCTTCAGTG ATCCGACGCT TCCGAAGAGC TTCAAGGCCG ATACCACGAT GAACTATGAG GCGGGGGTCA AGGGCAACCT GTTCGACCGG CACGTCACCT TCGACGTCTC GGCTTATTAT ATCGACTGGA GCAAGGTCCA CCTCCAACTG ATCATCAGCG GCCTCTCCAT TTTCACCAAT GGCGGTAAAG CGAGCAGCAA GGGCATTGAA GGCTCCTTCC AATATCACAA TGACAGCGGG CTAACGATCG CGGCGAACGG CAGCTACGGC GTCGCCAGAC TCGAAGAGGA TCCGCCGGCG GCAATCCCGG CCGACAAGGG CACGCGGCTG CCGTTCAGCC CCAAGTTCAG CGGCAGCCTG TCGATCGACC AGGATTTCGA CATTATGGAG GACTGGAAGG CGAGTGTCGG CGGCACGGTC GCCCATGTTG GTCGACGCTT CGGTCCGTTC CAGCCGGTGG CGTCGCGGCT CAACCTGCCG TCCTACACGA CCGTTGATCT GCGGATCGGC GCCAGGAATG ACGACTGGTC GATCACCGCC TATGTACGCA ACGTCGCCGA CAAGCGTGGC GTCCTGTCGG CCGCGGCCGA AGGATCGCAG GCGGTCACGG GCGTGTTTGG CGTCAACTAT GTCCAGCCAC GTACCATCGG CCTGTCGGTA GCGCGCAGCT TCTGA
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Protein sequence | MKRSVSIITI RKPLLAASAA AIAMTTSAAH AQSEPAAEGS GDIIVTAQKR AERLQDTPVP ITAINTAELA DHGVSRLQDY FSQVPGLSLN AQGNGKTNII IRGITTAVFG NPTVAVSIDD VPFGATNATA DGQLVQPDLD PADLERVEVL RGPQGTLYGA SSLGGLIKYV TRDPSTEAVS GRVQGDVNTV RKGEAGYALR GSVNLPLSDT VAVRASGHMR RSPGYVDNVL SGQKDVNTVD VYGGRVAMML KPNERIKVRL AVQHQDTRGD GTARTTTNFS LEPTFGDLKQ RYLPDSGMFH TRSTLATANI DLDFDDVTIT SVTGYGRNRN QERSDFSRSV GEPAAELAND MRTRKFTQEI RFAGQSGKPV EWMLGGFYTK EKSSSFQKIE RVTPITGAPV APAQTNIFTA DFPTSYEELA AFGFVTVNFT SKFNIQGGMR YSGNRQTIFE LDSGEFAGTL PGQPPVITAD TAASDESFTF LVVPQYKFSP DLMAYARVAS GYRPGGPNGA IFSDPTLPKS FKADTTMNYE AGVKGNLFDR HVTFDVSAYY IDWSKVHLQL IISGLSIFTN GGKASSKGIE GSFQYHNDSG LTIAANGSYG VARLEEDPPA AIPADKGTRL PFSPKFSGSL SIDQDFDIME DWKASVGGTV AHVGRRFGPF QPVASRLNLP SYTTVDLRIG ARNDDWSITA YVRNVADKRG VLSAAAEGSQ AVTGVFGVNY VQPRTIGLSV ARSF
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