| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_1073 |
|---|
| Symbol | |
|---|
| ID | 5196798 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | - |
|---|
| Start bp | 1198516 |
|---|
| End bp | 1199229 |
|---|
| Gene Length | 714 bp |
|---|
| Protein Length | 237 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640580618 |
|---|
| Product | protocatechuate 3,4-dioxygenase, beta subunit |
|---|
| Protein accession | YP_001261577 |
|---|
| Protein GI | 148553995 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG3485] Protocatechuate 3,4-dioxygenase beta subunit |
|---|
| TIGRFAM ID | [TIGR02422] protocatechuate 3,4-dioxygenase, beta subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 0.804087 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.121939 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGATGG ATGACCGGTT CGCTGCCGAC GATGCGGGCG CGCCGCCGTC GCGCCATGTC
GATTATCGCT CCACGCTCCT GCGTGCGCCG GACCAACCGC CGATCGATAT CCCGCAGACC
ATCACCGAGC TGACCGGGCC GGGCGACTGG GGGCGGTTGA TGGGCGGAGC GCTTGCCGAT
CTGACGACCC AGCACAAGGG AACGCCGATC GGGCAGCGCA TCCTGGTCTC CGGTCAGGTG
CTTGACGAAG ACCGGCGCCC CGTGCCGAAC ACCGTGATCG AAATCTGGCA GGCGAATGCC
GCCGGCCGCT ATATCCATTA TAACGACCGC TGGGATGCGC CGATCGATCC CAACTTCACC
GGCGCCGGGC GGGTCGTCAC CGACGAGGCG GGGCGGTACA GCTTCACCAC CATCCGGCCA
GGCGCCTATC CATGGGGCAA CCATCACAAT GCGTGGCGAC CTGCGCATAT CCACCTGTCG
CTGTTCGGCC CCGCCTTTGC GACGCGGCTC GTCACCCAAT TCTATTTTCC GGACGACCCG
CTGATCGAGA TCGATCCGAT AGCCAATGCC GTGCCCATGC CCTATCGTCA GCGCCTCGTG
GCACGGTTCG ACATCGGCTC GACGATTGCC AACTGGGCGT TGGGCTACCG TTTCGATCTG
GTGCTGAAAG GGCGCGAGCA GACGCCTTTC GAGGACGATG CGCATGACCA TTGA
|
|---|
| Protein sequence | MKMDDRFAAD DAGAPPSRHV DYRSTLLRAP DQPPIDIPQT ITELTGPGDW GRLMGGALAD
LTTQHKGTPI GQRILVSGQV LDEDRRPVPN TVIEIWQANA AGRYIHYNDR WDAPIDPNFT
GAGRVVTDEA GRYSFTTIRP GAYPWGNHHN AWRPAHIHLS LFGPAFATRL VTQFYFPDDP
LIEIDPIANA VPMPYRQRLV ARFDIGSTIA NWALGYRFDL VLKGREQTPF EDDAHDH
|
|---|
| |