| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_1067 |
|---|
| Symbol | |
|---|
| ID | 5199722 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | - |
|---|
| Start bp | 1191266 |
|---|
| End bp | 1192345 |
|---|
| Gene Length | 1080 bp |
|---|
| Protein Length | 359 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 640580612 |
|---|
| Product | vanillate monooxygenase |
|---|
| Protein accession | YP_001261571 |
|---|
| Protein GI | 148553989 |
|---|
| COG category | [P] Inorganic ion transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG4638] Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 0.535746 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.0980736 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTTCTGT TCAATGCCTG GTACATCGTT GCCGAGCCGG ACGAAGTCGC CGGCGGCGGG
ATCGTTGCCC GTACGCTGCT CGGCCGCAGG GTCGCGGTCT ATCGCGGCGC TTCGGGCGTG
CTCGTCGGGC TCGACGATTT CTGCCCGCAC CGGCTGGCGC CGCTGTCGCT CGGCACGGTG
GTGGGCGACG GCATACGCTG CGCCTATCAT GGCGCCGAGT TCGGCGCGGA CGGCATCTGT
GTGCGGGTAC CGGGGCAGAA GGCGGTGCCG CCCCGCGCGC GGGTGCGCAC CTATCCGGTG
GTCGAACGGC ACGGCTATAT CTGGATCTGG ATGGGCGATC CGGCGGGCGC CGCCGACGAA
AGCAGCATTC CCGAAGGTTT CTGGGTCAGC GGCGATCCGG CCTGGATCGG TGGCTATGGC
CATATCGAGT CGATCAGGAG CGACTATCGC CTGATCAACG ACAATCTCTT CGACATCACC
CATGCCGAGT TCGTTCACCC CGAAAGCTTC GGCGGGGTCG AGGTCCAATA TTATCGCAAC
GCCCGTCCCG GCGCCCAATT CGTCGACCAG GGCATGACCT TCGAGATCGG CGATCGATCG
ATCCGCTTCC GCACCCATGC CGCGCGGCTC GGGCTGGAGG GCGGGCCGCT ATGGCGGTCG
ATGGTCGCGC AGAGCCGGGG CGTCGCCGAA TGGAACGAGC CCGTGGACTT CCGCATGGAG
GTGATCTGGT GGGCGCCGAT CTACACCAGC TTCCATATCA GCGTGCGGCC GGCGGACGAA
CCCGATGCCG CGCCGGTGGA GATCTACAAT CTCCACGCCG CGGTGCCCGA AAGCGAGACC
AGCTCGCATT ATTTCTACCG CTCGATCCGC AACTATGGCG ATCCGTCGAT GGACGCGATG
TTCATCGACG CGGCGAACTT CGTCTTCCAT CAGGACAAGC CGATCCTGGA GGGGCAGCAG
GCGGTGCTCG GCACCCGCGA CCTGCTCGAC ACCGATCCCA TTTCCTTCGC CGGCGACCGG
CTACAGCTCG AGGGGCGCCG CATCCTCGGC CGGCTGCTCG CCGCCGAGCA GGAGGCGTGA
|
|---|
| Protein sequence | MFLFNAWYIV AEPDEVAGGG IVARTLLGRR VAVYRGASGV LVGLDDFCPH RLAPLSLGTV
VGDGIRCAYH GAEFGADGIC VRVPGQKAVP PRARVRTYPV VERHGYIWIW MGDPAGAADE
SSIPEGFWVS GDPAWIGGYG HIESIRSDYR LINDNLFDIT HAEFVHPESF GGVEVQYYRN
ARPGAQFVDQ GMTFEIGDRS IRFRTHAARL GLEGGPLWRS MVAQSRGVAE WNEPVDFRME
VIWWAPIYTS FHISVRPADE PDAAPVEIYN LHAAVPESET SSHYFYRSIR NYGDPSMDAM
FIDAANFVFH QDKPILEGQQ AVLGTRDLLD TDPISFAGDR LQLEGRRILG RLLAAEQEA
|
|---|
| |