| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_1043 |
|---|
| Symbol | |
|---|
| ID | 5197208 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | + |
|---|
| Start bp | 1160638 |
|---|
| End bp | 1161798 |
|---|
| Gene Length | 1161 bp |
|---|
| Protein Length | 386 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 640580588 |
|---|
| Product | L-carnitine dehydratase/bile acid-inducible protein F |
|---|
| Protein accession | YP_001261547 |
|---|
| Protein GI | 148553965 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1804] Predicted acyl-CoA transferases/carnitine dehydratase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.129255 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGGTCG ACGGACAGGG CCGCCGGGGG CCGCTCGCCG GCCTGCGCGT GCTCGACCTG
AGCGGCCTCG GCCCGGCGCC CTTCGCGACG ATGATGCTGG CGGACTTCGG CGCCGAGGTG
CTGAGCGTCC GCCGTCCCGA TCCGCTGCCC TTCGATCCCG CCGCCGCGAT GGCGCGCGGC
AAGGACGCGA TCGGCGTCGA CCTGCGCTCG CCCGAGGGCC AGGCGGTCGC GCGGCGGCTG
GCCAGGAGCG CCGACATCTT CGTCGAGGGC TTCCGCCCCG GCGTGATGGA GCGGCTCGGC
CTCGGCCCCG AGGTACTGAT GGCCGACAAT CCGGGGCTGA TCTACGCCCG CCTGACCGGC
TGGGGGCAGA GCGGCCCCTA TGCGAAGCGG GCCGGCCACG ACATCAACTA TCTCGCCATA
TCGGGCGCGC TCGCGGTGAT CGGCGAGGAC AAGCCGACCG CCCCGCCGGG GCTGCTCGGC
GATCTCGCCA ACGGTTCCTA CACGATGATG ATCGGCGTGC TGATGGCGCT GGTCGAGCGG
CAGCGCACCG GCAGGGGCCA GGTGGTCGAC GCCGCGATCG TCGACGGCGC CTCCTACATG
CTCGGGCCGA TGTTCGGCGA GCTGGAGCTG GGGCTGTGGG ACGGCGATCC CGACCATGCG
ATGCTCGGCG GCAAGGCGCC CTTCTACGGC GTCTATCGCT GTGCCGACGG CAAATGGTTC
TCGGTCGGCG CGATCGAGCA GAAATTCTAC GCGGCGATGC TGTCGATCCT CGGCCTCGAC
GACGTCGATC CCTCGGCCGA GGCGCAGATG GACCGGGATC GCTGGCCGGC GCTGCGCGAA
CGGATCGCGG CGGCCTTCCT GACGAAGCCG CAGGCGGCGT GGACCGAGGC GTTCGGCGCG
GTCGACTCCT GCGGCGCGCC GGTGCTGGCC GCCGGCGAGC TGGCCGCCGA TCCGCACAAT
GCGGCGCGCG GCACGGTCAC GGCCGACGGC GAGGGCATCC TCACCGCCGC GCCGGCCCCG
CGCCTGTCGG AGCATCCAGA GCTGGTGACC GCGCCCAATC CGCGCGGCAG CCGCCCGGCC
GACACGATCC TGGCCGAAGC CGGCTTCACC GCCGACGAGA TCGGCGAATT GACCGCGAAA
AAGGCGGTCT GGTCGCTATA A
|
|---|
| Protein sequence | MAVDGQGRRG PLAGLRVLDL SGLGPAPFAT MMLADFGAEV LSVRRPDPLP FDPAAAMARG
KDAIGVDLRS PEGQAVARRL ARSADIFVEG FRPGVMERLG LGPEVLMADN PGLIYARLTG
WGQSGPYAKR AGHDINYLAI SGALAVIGED KPTAPPGLLG DLANGSYTMM IGVLMALVER
QRTGRGQVVD AAIVDGASYM LGPMFGELEL GLWDGDPDHA MLGGKAPFYG VYRCADGKWF
SVGAIEQKFY AAMLSILGLD DVDPSAEAQM DRDRWPALRE RIAAAFLTKP QAAWTEAFGA
VDSCGAPVLA AGELAADPHN AARGTVTADG EGILTAAPAP RLSEHPELVT APNPRGSRPA
DTILAEAGFT ADEIGELTAK KAVWSL
|
|---|
| |