| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_1028 |
|---|
| Symbol | |
|---|
| ID | 5197290 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | + |
|---|
| Start bp | 1145744 |
|---|
| End bp | 1146511 |
|---|
| Gene Length | 768 bp |
|---|
| Protein Length | 255 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 640580574 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_001261533 |
|---|
| Protein GI | 148553951 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 37 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.0631303 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTAGGC TCGCGGGGCG GGTCGCGCTC GTCACCGGCG GCGCGCGCGG GATCGGGCGC
GGCATCGTCG AGCGATTCCT GGCGGAAGGC GCGACGGTGA TGGCCACCGA CCTCGACGTG
GACGACGCGC CGGTCGCGGC GGAACTGGGC GAGCGCGCGC TCTATCACCG CCTCGACGTC
ACCCGCGCCG ACGACTGGAC CGCCGCCCTC GACGCGCTGC GCGATCGCTG CGGGCGCGTC
GACATCCTCG TCAACAATGC GGGGACGAGC CGCAGCGGAT CGATCGAGGA TGCAAGCGAG
GCCGACTGGC GCTTCGTGAT GGACACCAAC GCGCTCAGCG TCTTCCTCGG CTGCCAGGCG
GCGGTGAGGG CGATGCGCGC GACCGGCGGC GCGATCGTCA ACATCGCCTC GGCGCGCGGC
CAGCGCACCG GCGCCGCGCA ATGCGCCTAT TCGGCGTCCA AGGCGGCGGT GCTCAGCCTG
ACCGAGAGCG TCGCGCTCCA TTGCGGCGAG CAGGGCCTGC CGATCCGCTG CAACGCGATC
TGCCCCGGCG TGATCGACAC CCCGCTGATG CGCCAGCATG CCGCGAGCGA GGCGCCGGGC
GATCCCGGCG CGGTGATCGG GCGGATGACG GCGATGGGGA TCGTCGGCCG GCTCGGCACC
CCGCGCGAGA TCGGCGACGC CGCCGTCTTC CTGGCGTCGG ACGAAGCGGG CTTCGTCACC
GGGGCGGTGC TGAACGTCGA CGGGGGATTC CGGATCAGGG ATTTCTAG
|
|---|
| Protein sequence | MSRLAGRVAL VTGGARGIGR GIVERFLAEG ATVMATDLDV DDAPVAAELG ERALYHRLDV
TRADDWTAAL DALRDRCGRV DILVNNAGTS RSGSIEDASE ADWRFVMDTN ALSVFLGCQA
AVRAMRATGG AIVNIASARG QRTGAAQCAY SASKAAVLSL TESVALHCGE QGLPIRCNAI
CPGVIDTPLM RQHAASEAPG DPGAVIGRMT AMGIVGRLGT PREIGDAAVF LASDEAGFVT
GAVLNVDGGF RIRDF
|
|---|
| |