Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swit_1022 |
Symbol | |
ID | 5198770 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingomonas wittichii RW1 |
Kingdom | Bacteria |
Replicon accession | NC_009511 |
Strand | - |
Start bp | 1138728 |
End bp | 1140881 |
Gene Length | 2154 bp |
Protein Length | 717 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 640580568 |
Product | TonB-dependent receptor |
Protein accession | YP_001261527 |
Protein GI | 148553945 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 0.549497 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.0859542 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATCACCA AAACCATGCT TTCGCTGTCG GTCGCCGCGG GCGCGCTGTT CGCCGCCGCG CCGGCCTTCG CCCAGGCCGA TGCGCCGCAA GCCGCCGCCG AGACCGCCGA CCAGGGTGGC TTCGGCGACA TCATCGTCAC CGCGCAGCGC CGCGAGCAGC GGCTGCAGGA CGTGCCCGTC TCGGTCACCG CGCTGACCGG CGAGCAGCTC ACCGGGCAGG GCGTCACCTC GACCCACGAC ATCGCCCAGT CGATCACCGG CATGACGATC ACCGAGAGCG GCGGCTATGT GCAGCCCTTC ATCCGTGGCG TCGGATCGAC CGTCACCAAC CTCGGCGAGC CGGGATCGGC GGCCTTCTAC ATCGACGGCG TCTACATGCC GACCGTCAAC GGCCAGCTCT ACCAGCTCGC CAACGTCGAA TCGATCCAGG TGCTGAAGGG GCCGCAGGGC ACGCTGTTCG GCCGCAACGC CAACACCGGC GCGATCATCA TCACCACCAA GCAGCCGCAG TTCACGCCCG CGGGCTCGTT CAGCGCCAGC TACGGCAATT ACAACTCGTT CGTCGGCAGC GGCTTCGTCA CCGGCCCGGT CTCCGACACG ATCGCGGTGT CGCTGGCCGG CAATTACGAC CGCCACGACG GCTGGTTCAA GAACAGGAAC CCGGCCAACG GCCTGGGCAA GCGCGTCGGC GATTCCAAAC GCTGGACGAT TCGCGGCAAT GTCCTGATCA AGGCGAGCGA CAATCTCGAC ATCACCCTGT CGGGCGACGC GATGGACATC AACGACGCCA GCCCGATCAT CATCCAGCCG ATCGACCGCT ATCAGGGCTA TGTCCCCGGC GCGCTGCTGC CGACCGGGCC CTATGACTAT ATCGGCAACG AGAAGGTCGG CTACAAGGTC GAGCAGCAGG GCGCGTCGGG CAAGCTCGAC TGGGATCTCG GCGGCGTGAA GCTGGTCTCG ACGACCGCGT GGCGCCATTA TGAGAACCAT TCGATCGACT ATGACTCGGA CACCACGCCG TTCCGCTACT CGCAGATCAA CAACAACGAC GTCGGCAACA ACTTCACCCA GGAAATCCTG CTCAACTCGG ACAACAAGAG CAATTTCTCC TGGGTGCTCG GCGGCTTCTA CCTGCGCCAG AACGGCAAGC TCGACCCGCT CTACGTGCTG TCGGGGACGA CGCTGACGAC GATCGCGGTC AAGCAGATCA CCGACGCCTA TGCGGTCTTC GCCGACGGGA CGCTGACGCT CGGCCGGTTC GACCTGACCG GCGGCATCCG CTACAGCTAT GAGAAGAAGG TGATCACCGG ATCGCTCAAC GGCATCCAGC GGCTCGACCA TGTCAAGGCG AGCTGGGATT CGTTCACGCC GCGCGCGGTG CTGGCCTATC ATCCGACCGA CGACATGATG TTCTACGGAA GCTTCTCCAA GGGCTTCAAG AGCGGCGCGT TCAACGCCAA CGCGCTGTCG CCGGTGCCGA TCGATCCCGA GAAGGTCGAC GCCTATGAGA TCGGCGGCAA GCTGACCCTG GGCCGCGGCT TCACCGTCAA CGTCGCGGGC TTCCACTACA AGACCAAGGA CCTGCAGGTG CAGGCGCTCA ACCCGATCAC CAACCTGATC GAGCTGCGCA ACGCCGCGTC GGTCAAGTCG GACGGCGTCG ACCTCGACGT CGTGTTCGCG CCGACCCGCA AATGGTCGAT CAAGTTCGGC GCCTCCTATC TGAAGGCGAA ATTCTCGAAG TTCACCAATG CGCAGGTGTT CCTGCCGGTG CCGGGCGGCG ATGGACGCAA CGCGTCGGCG ATCGTCGACG TGACGGGCAA GCGCAACGTG CGGTCGCCCG ACTGGACGCT CAACTGGGCG GTCGACTATA CGATCGACCT GCCGGGCGGC GGGACGCTCG TCCCCTCGGG CAACGTCTAT TATTCGTCCA AATTCTACTG GACGGTCGAC AACCGCATCT CCGAGCCGCA GCATGTCGTG ATCAACGCCA GCCTGACCTG GAACCTGCCG GGCGACCGCT TCTCGGTCAC GGCGTTCGGC CGGAACATCA CCGACGAGCT GCGCTTCCGC AACGTCTCCG CCTCGGCCCA GGCCGACCGG CGCGCGGCGG ACGAGCCGGC GCTCTACGGC GTCCGCGCCT CGTACAAGTT CTGA
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Protein sequence | MITKTMLSLS VAAGALFAAA PAFAQADAPQ AAAETADQGG FGDIIVTAQR REQRLQDVPV SVTALTGEQL TGQGVTSTHD IAQSITGMTI TESGGYVQPF IRGVGSTVTN LGEPGSAAFY IDGVYMPTVN GQLYQLANVE SIQVLKGPQG TLFGRNANTG AIIITTKQPQ FTPAGSFSAS YGNYNSFVGS GFVTGPVSDT IAVSLAGNYD RHDGWFKNRN PANGLGKRVG DSKRWTIRGN VLIKASDNLD ITLSGDAMDI NDASPIIIQP IDRYQGYVPG ALLPTGPYDY IGNEKVGYKV EQQGASGKLD WDLGGVKLVS TTAWRHYENH SIDYDSDTTP FRYSQINNND VGNNFTQEIL LNSDNKSNFS WVLGGFYLRQ NGKLDPLYVL SGTTLTTIAV KQITDAYAVF ADGTLTLGRF DLTGGIRYSY EKKVITGSLN GIQRLDHVKA SWDSFTPRAV LAYHPTDDMM FYGSFSKGFK SGAFNANALS PVPIDPEKVD AYEIGGKLTL GRGFTVNVAG FHYKTKDLQV QALNPITNLI ELRNAASVKS DGVDLDVVFA PTRKWSIKFG ASYLKAKFSK FTNAQVFLPV PGGDGRNASA IVDVTGKRNV RSPDWTLNWA VDYTIDLPGG GTLVPSGNVY YSSKFYWTVD NRISEPQHVV INASLTWNLP GDRFSVTAFG RNITDELRFR NVSASAQADR RAADEPALYG VRASYKF
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