| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_1001 |
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| Symbol | |
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| ID | 5200207 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009511 |
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| Strand | + |
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| Start bp | 1114176 |
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| End bp | 1116272 |
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| Gene Length | 2097 bp |
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| Protein Length | 698 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 640580547 |
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| Product | Pyrrolo-quinoline quinone |
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| Protein accession | YP_001261506 |
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| Protein GI | 148553924 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG4993] Glucose dehydrogenase |
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| TIGRFAM ID | [TIGR03075] PQQ-dependent dehydrogenase, methanol/ethanol family |
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.132908 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGCGCGA TCGGGGGAAT GGGCATGAAG CGTCTCGTCA TCGGCCTCGC CGGCGCCGCC
GCGCTCGCCA TCGCCGCATC GCACGTCACC GCGCAGGAAG GCGGCAGCGC CTCGACCGTC
AGCGCCGACG AATGGCCCTA TTATGGCCGC GACGAGAAGG AACAGCGGTT CAGCCCGCTC
GACCAGATCA ACCGCGCCAC CGTGGCGAAG CTCGGCCTCG CCTGGAGCGC GGAGCTCGAC
AGCGACCGGG GACAGGAGGC GACCCCGATC ATGGTCGACG GGGTGATCTA TGTCAGTACC
GCCTGGTCGC TGGTCTACGC CTTCGACGCG GCGACCGGAA AGCAGCTCTG GTCCTACGAT
CCGCAGGTGC CGCGCGAGTC GCTCGCCAGC GCCTGTTGCG ACGCGGTCAA TCGCGGCGTC
GCCGTGCACG GCGGCAAGGT GTTCGTCGGC ACGTTGGACG GCCGCCTCGT CGCGGTCGAC
GCGAAGACCG GCAAGCTTGC CTGGCAGGTC GACACGCTCG CCGGTCAGCC CAAAACGATG
CGCTACACCA TCACCGGCGC GGTCCGCGCG GTGAAGGACA AGGTGGTGAT CGGCAACAGC
GGCGCCGAGT TCGGCGTGCG CGGCTTCGTC ACCGCCTATG ACGCCGCCAC CGGCAAGCTC
GCCTGGCGCT TCTACCTGAC CCCCAATCCG CAGGGCAAGC CGGACGGAGC GGCGTCGGAC
GAGGTTCTGC TCGCCAGGGC GCAGTCGACC TGGGGCGACG GCGAATGGCG CAACAGCGGC
GGCGGCGGCA CTGCCTGGGA CGCGCTGACC TACGATCCAG ACGCCGACCT GCTCTACATC
GGCGCCGGCA ATGGCGGACC GTTCGACTAT CAGGTCCGCT CGGGCGGCAA GGGCGACAAC
CTGTTCCTGT CGTCGATCGT CGCGGTCGAT CCCGACACCG GCAGATATGC CTGGCACTAC
CAGACCACCC CGTCCGACAG CTGGGATTAT ACCGCGACCC AGCAGATCAT GGGCGCGCGC
CTCGTCATCG GCGGCAAGCC ACGCGACGTG GTGATGCAGG CGCCCAAGAA CGGCTATTTC
TATGTGCTCG ACCGCAAGAC GGGCGAGCTG CTCTCGGCCA GGCCGTTCGC GCCCGTCACC
TGGTCGACCG GCATCGACAT GACGACCGGC CGGCCAATCC TGGCGAAGAA CGTCCATTAT
CAGGACGGCC CCTCGATCCA GCAGCCGGGA CCGTTCGGCG CGCATAGCTG GCAGGCGATG
TCGTACAGCC CGCGCACCGG GCTGGTCTAT ATCCCGGTCC AGCTCACCCC CGGCGAATAT
GAGAAGCTCC CCGCCTTCCA GCATCGCCCG ATCGGCCAGA ATGCCGGCAT CGCGATGAAG
GAATTCCCGG AGGACCAGCT CGACGCGATC CGCAAGGCGA TGACCGGCCA GCTCCTCGCC
TGGGACCCGG TCGCGCAAGC GGCGCGCTGG TCGGTGCCGA AGCGCTATTT CGTCAATGGC
GGCACGCTGG CGACGGCCGG CGACCTGGTG TTCCAGGGCG ACATGGAGGG CATGCTCGCC
GCCTATGACG CGGCCAGCGG CGCGAAGCTC TGGTCGTTCG ACGCCGGCAC CGCGATCATC
GCGCCGCCGA TCAGCTACCG GATCAAGGGC CAGCAATATG TCGCCGTCCT CTCGGGGTTC
GGCGGCGCCG GCGCGCTGGT CGGCCGGGTC GTGCCCGACA ATCCGCGCCG CAACGGCCGG
CTGCTGGTGT TCAAGCTCGG CGGCACGGCA AAGCTGACGC GCGAGCCCCC CGCCCCGCGC
GCGCCGATCG ACGTGACCGG ACTGACCTCG ACCGGCGATC CCGACGCGGG CATGGCCGAA
TATGACCGCA CCTGCACGGT CTGCCACGGC GGCAACGCCT CGGTCGCCTA CACCGCCGAC
CTGCGCCGCT CGGGCGCGCT CGCCGATCCG GCGCTGTGGA AGGCGATCGT GATCGACGGC
GCGCTCAAGG ACATGGGCAT GGTGTCCTTC GCCCAGATCC TCACCCCGCA ACGCGCCGAG
GACATCCGCG CCTATGTGCT GCGCCAGGCG CGGAAGGGCC AGGCGGCGGG GAAGTAG
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| Protein sequence | MRAIGGMGMK RLVIGLAGAA ALAIAASHVT AQEGGSASTV SADEWPYYGR DEKEQRFSPL
DQINRATVAK LGLAWSAELD SDRGQEATPI MVDGVIYVST AWSLVYAFDA ATGKQLWSYD
PQVPRESLAS ACCDAVNRGV AVHGGKVFVG TLDGRLVAVD AKTGKLAWQV DTLAGQPKTM
RYTITGAVRA VKDKVVIGNS GAEFGVRGFV TAYDAATGKL AWRFYLTPNP QGKPDGAASD
EVLLARAQST WGDGEWRNSG GGGTAWDALT YDPDADLLYI GAGNGGPFDY QVRSGGKGDN
LFLSSIVAVD PDTGRYAWHY QTTPSDSWDY TATQQIMGAR LVIGGKPRDV VMQAPKNGYF
YVLDRKTGEL LSARPFAPVT WSTGIDMTTG RPILAKNVHY QDGPSIQQPG PFGAHSWQAM
SYSPRTGLVY IPVQLTPGEY EKLPAFQHRP IGQNAGIAMK EFPEDQLDAI RKAMTGQLLA
WDPVAQAARW SVPKRYFVNG GTLATAGDLV FQGDMEGMLA AYDAASGAKL WSFDAGTAII
APPISYRIKG QQYVAVLSGF GGAGALVGRV VPDNPRRNGR LLVFKLGGTA KLTREPPAPR
APIDVTGLTS TGDPDAGMAE YDRTCTVCHG GNASVAYTAD LRRSGALADP ALWKAIVIDG
ALKDMGMVSF AQILTPQRAE DIRAYVLRQA RKGQAAGK
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