Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swit_0999 |
Symbol | |
ID | 5200205 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingomonas wittichii RW1 |
Kingdom | Bacteria |
Replicon accession | NC_009511 |
Strand | - |
Start bp | 1110218 |
End bp | 1112386 |
Gene Length | 2169 bp |
Protein Length | 722 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 640580545 |
Product | TonB-dependent receptor |
Protein accession | YP_001261504 |
Protein GI | 148553922 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 0.285089 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.123899 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGACTC ATGCACTATT GCTGGCGGGT GTCGCTCTCG GGACCTGCAT CGCGATGCCG GCCTTTGCGC AGGCCGCGCC CGATGCCGAC ACGGATACGG GCCTGCAGGA CATCGTCGTC ACCGCGCAGC GCCAGTCGCA GTCGCTGCAG CGCGTCCCGA TCGCGGTGAC CGCGGTGACG GCCGGCGACC TCGCGTCGCG GCAGATCACC AACACGCTCA ACCTCGAATC GGCGGTGCCG AACCTGACCC TGACCCAGAA CGGCGTGTCG GTGACGCCGT TCCTGCGCGG CGTCGGATCG AACCAGTCCA ACCCGAACGA CGAGGCGTCG GTCGCGACCT ATATCGACGG CGTCTACATC CCGTCGGTGA CCGGCAACAT CTTCAAGTTC AACAATGTCG AGCGGATCGA GGTGCTGAAG GGGCCGCAGG GCACGCTGTT CGGCCGCAAC GCCACCGGCG GCGTCATCCA GATCGTCACC CGCGATCCCG ACATCGACGC GCCGCTGCTC GACGTCAGCA TCGGCGCCGG CAAATACGGC ACGATCGAGG CCAATGGCTA TGCCTCGACC GGGCTGGGCG AGAAGGCCGC GATCGACCTG GCGGTCAGCT TCGACCGCAA CGACGGCTAT GGCAAGGACA TCAACCGCAA CGCCGACATC TTCAAGCACA ACCAGCTCGG CCTGCGCTCC AAGCTGCTGT TCAAGCCGGG CGAGAACACC GAGATCCGGC TGACCGCCGA CTATAGCCGG CTCAATTCGA CCGGCACCGA CTATCAGCTC CGCCAGGGCG TGATCGGCGC CGACGGCGTC ACCAGCTATC CCGGCAAGCG CCGCACCAAC ACCGACTGGA AGAACACCGG CGACAACGAC ATCTACGGCG CGTCGCTGCG CATCGACCAG GACATGGGCT TCGCGCGGCT CGCCAGCATC ACCGGCTATC GCCACGTCAA GGGCGACTTC CACCTCGACC AGGACGCGAC GCCGACGCCG ATCGTCCAGG CCGACATCAA CCAGTTCGCC GAGAGCTATT CGCAGGAGCT CCAGCTCCTC GCGCCGACGG ATTCGAAGAT CGACTGGCTG GTCGGCGGTT ATTATTTCCA CGCCAAATAT GCCTATACGC CGCTCCGCCT CGGCGGCCTC GCGGCGGCAC CGCTGCCCGC GATCGACCTG TTCGGCGATC AGAAGACCAA GTCGCTGTCG ATCTACGGCC AGGCGACCGT GCCGGTCACC GCGACGACCA AGATCACCGG CGGCCTGCGC TACACCTATG AGAAGCAGGA TACGGACGGC CGCACCGAGA GCGGCGGCGT CGTCTTCCCG CACGCGCCCA ACGCGCTCTG CCCGGGGGCG ACCACCGACT GCCCGCAGTC GCAGGACATC AAGAAGCTGA CCTGGCGCGT CTCGATCGAC CAGGAACTGG GCGACGGCGT GCTCGGCTAT CTCTCCTACA ACCGCGGCAT CAAGAGCGGC GGCTTCAACA TGATCAACGC CGGCACCCCC GGCTACAAGC CCGAGATCCT CGACGCCTAT GAGGCGGGGC TGAAGATGCA GCTGTTCGAC CGCAGGGTGC GCCTGAACGC CGCCGCCTTC ATCTACGACT ATCAGGACAT CCAGGTGTTC AACATCACCG GCGGCGGCGC GGTGCTGACC ACCAACGCGG CGGCGGCGCG GGTCCACGGC TTCGACGCCG ACATCGCGAT CAAGGCGACG TCGAACCTGA CGCTGAGCGG CGGCTTCGGC TGGCTCGACG GCAAGTATAC CGACTTCCCC AACGCGACCT ACACGCCGCC GTCGCCGCTG ATGGGGCCGC AGGTGCCGAT CGACGCCACC GGCAACCGCA TGATCTACGC GCCAAAATAT AGCGGCAATG TCACCGTCGA CTATCGCATG CCGACCAGCG TCGGCGAGTT CGGGGTCAAC GTCTCGGCGG CGGTGCGCAG CCGGGTGTTC GTGACGGCGG CCAACCGGCT GGCGATCCCG GGCTACACGG TGGTCAACTC GACGCTGAGC TGGACCTCGC AGGACCAGCG CTTCGGCGCG CAATTCTGGG TCCGCAACCT GTTCGACAAG GATTATTACC TGAACCGCAC CGAGCAGGCG CTCGGCGACA TCCAGTTCCT GGCGCCGCCG CGCACGATCG GCGTGACGCT CAGCTTCAAG AGCCGCTAA
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Protein sequence | MKTHALLLAG VALGTCIAMP AFAQAAPDAD TDTGLQDIVV TAQRQSQSLQ RVPIAVTAVT AGDLASRQIT NTLNLESAVP NLTLTQNGVS VTPFLRGVGS NQSNPNDEAS VATYIDGVYI PSVTGNIFKF NNVERIEVLK GPQGTLFGRN ATGGVIQIVT RDPDIDAPLL DVSIGAGKYG TIEANGYAST GLGEKAAIDL AVSFDRNDGY GKDINRNADI FKHNQLGLRS KLLFKPGENT EIRLTADYSR LNSTGTDYQL RQGVIGADGV TSYPGKRRTN TDWKNTGDND IYGASLRIDQ DMGFARLASI TGYRHVKGDF HLDQDATPTP IVQADINQFA ESYSQELQLL APTDSKIDWL VGGYYFHAKY AYTPLRLGGL AAAPLPAIDL FGDQKTKSLS IYGQATVPVT ATTKITGGLR YTYEKQDTDG RTESGGVVFP HAPNALCPGA TTDCPQSQDI KKLTWRVSID QELGDGVLGY LSYNRGIKSG GFNMINAGTP GYKPEILDAY EAGLKMQLFD RRVRLNAAAF IYDYQDIQVF NITGGGAVLT TNAAAARVHG FDADIAIKAT SNLTLSGGFG WLDGKYTDFP NATYTPPSPL MGPQVPIDAT GNRMIYAPKY SGNVTVDYRM PTSVGEFGVN VSAAVRSRVF VTAANRLAIP GYTVVNSTLS WTSQDQRFGA QFWVRNLFDK DYYLNRTEQA LGDIQFLAPP RTIGVTLSFK SR
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