Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swit_0964 |
Symbol | |
ID | 5197808 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingomonas wittichii RW1 |
Kingdom | Bacteria |
Replicon accession | NC_009511 |
Strand | - |
Start bp | 1072465 |
End bp | 1074876 |
Gene Length | 2412 bp |
Protein Length | 803 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 640580510 |
Product | TonB-dependent receptor |
Protein accession | YP_001261469 |
Protein GI | 148553887 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.110635 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACATGG CAAGGCAGAA TGAGATGGGG GCGATCGCAG CGCCGCGGCG CGGCCGCGGC CTGCTGCTGA TCGGCGCGTC GCTGATCGGG CTGGCGGCGC CGGCCGGCAT GGCGAGCGCG CAGCAGGCGC CGGCCGAAGC CGCGTCCGCC GACGCGGTCG ACGGCGTCGA GGTCATCACC GTCACCGCGC GGCGCCGCGC GGAATCGCTG CAGGACACGC CGATCGCGAT CTCGGCGGTG ACGTCCGAAG GGCTGACCGC GCGCGGCATC GACAACGTCA CCCAGATCGG CGACTTCACC CCGAACGTGA AGTTCAACAG CTCGGTGCCG GTCTCGGCGA GCAACGCGAC CGCCGCGATC TTCATCCGCG GCATCGGCCA GAACGACTAT CAGCTCTCGG CCGATCCCGG CGTCGGCCTC TACCTCGACG GCGTCTACAT CTCGCGCGGG GTCGGCAACG TCCTCGACGT GCTCAACGTC GAGCGGATCG AGGTGCTGCG CGGGCCGCAG GGCACGCTGT TCGGCCGCAA CACGATCGGC GGCGCCGTCA GCGTCGTCAC CAAGAAGCCG GGCGACAAGC TGGCCGGATC GCTGGAGCTG ACCACCGGCC GCTTCAACCG CATCCAGGCG AAGGGTTCGA TCGACGTGCC GCTCGCCGAG GGCGTCTATT CGAGCTTCGC AGGCTTCTAC CACAAGCGCG ACGGCTATGT GAAAGGCGTG GTCGCGGGCG CGCCCGACCT GGGCGACACC GACCAGCTCG CCGGCCGCTT CGCGCTGCGC CTCGAACCGT CGAGCGACGT CACCATCGAC CTGGCGGTCG ACGGATCGCG GGCGCGGGAG CAGTCGGCCC CCAACGTCGC CATCGCGATC GACGAGAACG CGCCGGCCGC CCAGGTGTGG AACGCGGTCT ATTCGGGCGC GCCGGGCATC TGCGCCAACA CCGCCGATCC CAGCCGCTTC ACCGACCAGC GCTGCTTCAA CAACCAGTGG GCCCTCGGCC CCTATCGCCA CGGCGGCACC TTCACCTCGG TCTCGGGCGT GTTCACCAAC GGTAATCCCA AGCGCTACCA GTCGGCGTCC AACCTGAACA TCTGGGGCGC GTCGGGCACG ATCGAATGGA AGATCGCCGA CGGCATCTCG TTCAAGTCGA TCACCGCCTA TCGCAAGGTC ACCGGCTTCT GGACCCGCGA TTCCGACCAT AGCCCGGCGA CGATCGTCGA GACCAACAGC GACTGGAAGC AGGATCAGTT CTCGGAGGAG GTCCAGCTTC AGGGCGACGT CGCGGACGGC CGCTTCAACT GGGTGGTCGG CGGCTATTAT TCGAGCGAGA GCGGCAACCA TCGCGACCTC GTCAACATCG TCGACGCGGT GTTCCTGAGC GGCGCGGTGC TCGACGGCAA GAGCCTCGCC TTCTTCGGGC AGGGCACCTA CGAGATCGTC CACAACCTGA ACCTCACCGC CGGCATCCGC TGGACCGAGG ACAAGAAGAC CTTCGGCAAC GCCAACCAAT ATGTGGTGGA GGCGGGCTTC CTGACCGGGG CGCCGTTCAA CCCGGACGGC TCGGGCCTGC AGAACGGTGA TCCGCTGATG GGGCCGCTCG GCCAGCGGTC GACGGTGAAG GATACCGCCT GGACGCCGAT GGCCAGCCTG TCCTATCGCT TCAGCCCCGA GCTGCTCGGC TACGTGTCCT ATTCGGAAGG CTTCAAGGGC GGCGGCTTCA CCCAGCGCGT CTTCCCGCCC TTCGCCTTCA TCCCGTCGTT CAAGCCGGAA ACCAGCACCA CCTATGAGGT CGGCTTCAAG TCGGACCTGT TCGGCCGCAA GCTGCGGCTG AACGGCGCCG CCTTCCTGAA CGACTATGAC GACCTGCAGA TCACCGTGAA CGACCCGACG CTGGGCTTCG CGCCGATCAT CCAGAATGCG GCGAAGGCGC GGATCAAGGG CTTCGAGCTG GAGATGCAGG CGCGCCCGAT CGGCGGGCTG CAGATCGACG CGGGCCTCGG CTATCTCGAC GCCAAGTATC GCCGGGTCGA CATCCGCGCG CTCAACGCCG GCGTGACGAC CGCGACCAAG CTGCAGAATG CGCCGAAATG GACGCTGAGC GCCGGCGTCG CCTACAATAT CCAGGCGGAC GGCATCGGCA GCTTCCAGCC GCGCGTCGAC TGGTCCTACC GGTCGCGGGT CTACAACGAC GCGGTCAACA ACCCGCTGCT CGTCCAGGAC GGCTATCATC TGGTCAACGC CTCGGTCGCC TGGACCGACG AGGACAAGCG CTGGGGCATC ACCGCCGGCG TCAAGAACCT GACCAAGGAG GTCTATCTCG GATCGGGCTA TGCCGACTCC TTCGGCGGCC TGGTCGAGGG CGTCTATGGC CGTCCGCGCG AATGGTATCT CAGCGCGCGC TATTCCTTCT GA
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Protein sequence | MNMARQNEMG AIAAPRRGRG LLLIGASLIG LAAPAGMASA QQAPAEAASA DAVDGVEVIT VTARRRAESL QDTPIAISAV TSEGLTARGI DNVTQIGDFT PNVKFNSSVP VSASNATAAI FIRGIGQNDY QLSADPGVGL YLDGVYISRG VGNVLDVLNV ERIEVLRGPQ GTLFGRNTIG GAVSVVTKKP GDKLAGSLEL TTGRFNRIQA KGSIDVPLAE GVYSSFAGFY HKRDGYVKGV VAGAPDLGDT DQLAGRFALR LEPSSDVTID LAVDGSRARE QSAPNVAIAI DENAPAAQVW NAVYSGAPGI CANTADPSRF TDQRCFNNQW ALGPYRHGGT FTSVSGVFTN GNPKRYQSAS NLNIWGASGT IEWKIADGIS FKSITAYRKV TGFWTRDSDH SPATIVETNS DWKQDQFSEE VQLQGDVADG RFNWVVGGYY SSESGNHRDL VNIVDAVFLS GAVLDGKSLA FFGQGTYEIV HNLNLTAGIR WTEDKKTFGN ANQYVVEAGF LTGAPFNPDG SGLQNGDPLM GPLGQRSTVK DTAWTPMASL SYRFSPELLG YVSYSEGFKG GGFTQRVFPP FAFIPSFKPE TSTTYEVGFK SDLFGRKLRL NGAAFLNDYD DLQITVNDPT LGFAPIIQNA AKARIKGFEL EMQARPIGGL QIDAGLGYLD AKYRRVDIRA LNAGVTTATK LQNAPKWTLS AGVAYNIQAD GIGSFQPRVD WSYRSRVYND AVNNPLLVQD GYHLVNASVA WTDEDKRWGI TAGVKNLTKE VYLGSGYADS FGGLVEGVYG RPREWYLSAR YSF
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