| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_0964 |
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| Symbol | |
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| ID | 5197808 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009511 |
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| Strand | - |
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| Start bp | 1072465 |
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| End bp | 1074876 |
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| Gene Length | 2412 bp |
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| Protein Length | 803 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 640580510 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_001261469 |
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| Protein GI | 148553887 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.110635 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACATGG CAAGGCAGAA TGAGATGGGG GCGATCGCAG CGCCGCGGCG CGGCCGCGGC
CTGCTGCTGA TCGGCGCGTC GCTGATCGGG CTGGCGGCGC CGGCCGGCAT GGCGAGCGCG
CAGCAGGCGC CGGCCGAAGC CGCGTCCGCC GACGCGGTCG ACGGCGTCGA GGTCATCACC
GTCACCGCGC GGCGCCGCGC GGAATCGCTG CAGGACACGC CGATCGCGAT CTCGGCGGTG
ACGTCCGAAG GGCTGACCGC GCGCGGCATC GACAACGTCA CCCAGATCGG CGACTTCACC
CCGAACGTGA AGTTCAACAG CTCGGTGCCG GTCTCGGCGA GCAACGCGAC CGCCGCGATC
TTCATCCGCG GCATCGGCCA GAACGACTAT CAGCTCTCGG CCGATCCCGG CGTCGGCCTC
TACCTCGACG GCGTCTACAT CTCGCGCGGG GTCGGCAACG TCCTCGACGT GCTCAACGTC
GAGCGGATCG AGGTGCTGCG CGGGCCGCAG GGCACGCTGT TCGGCCGCAA CACGATCGGC
GGCGCCGTCA GCGTCGTCAC CAAGAAGCCG GGCGACAAGC TGGCCGGATC GCTGGAGCTG
ACCACCGGCC GCTTCAACCG CATCCAGGCG AAGGGTTCGA TCGACGTGCC GCTCGCCGAG
GGCGTCTATT CGAGCTTCGC AGGCTTCTAC CACAAGCGCG ACGGCTATGT GAAAGGCGTG
GTCGCGGGCG CGCCCGACCT GGGCGACACC GACCAGCTCG CCGGCCGCTT CGCGCTGCGC
CTCGAACCGT CGAGCGACGT CACCATCGAC CTGGCGGTCG ACGGATCGCG GGCGCGGGAG
CAGTCGGCCC CCAACGTCGC CATCGCGATC GACGAGAACG CGCCGGCCGC CCAGGTGTGG
AACGCGGTCT ATTCGGGCGC GCCGGGCATC TGCGCCAACA CCGCCGATCC CAGCCGCTTC
ACCGACCAGC GCTGCTTCAA CAACCAGTGG GCCCTCGGCC CCTATCGCCA CGGCGGCACC
TTCACCTCGG TCTCGGGCGT GTTCACCAAC GGTAATCCCA AGCGCTACCA GTCGGCGTCC
AACCTGAACA TCTGGGGCGC GTCGGGCACG ATCGAATGGA AGATCGCCGA CGGCATCTCG
TTCAAGTCGA TCACCGCCTA TCGCAAGGTC ACCGGCTTCT GGACCCGCGA TTCCGACCAT
AGCCCGGCGA CGATCGTCGA GACCAACAGC GACTGGAAGC AGGATCAGTT CTCGGAGGAG
GTCCAGCTTC AGGGCGACGT CGCGGACGGC CGCTTCAACT GGGTGGTCGG CGGCTATTAT
TCGAGCGAGA GCGGCAACCA TCGCGACCTC GTCAACATCG TCGACGCGGT GTTCCTGAGC
GGCGCGGTGC TCGACGGCAA GAGCCTCGCC TTCTTCGGGC AGGGCACCTA CGAGATCGTC
CACAACCTGA ACCTCACCGC CGGCATCCGC TGGACCGAGG ACAAGAAGAC CTTCGGCAAC
GCCAACCAAT ATGTGGTGGA GGCGGGCTTC CTGACCGGGG CGCCGTTCAA CCCGGACGGC
TCGGGCCTGC AGAACGGTGA TCCGCTGATG GGGCCGCTCG GCCAGCGGTC GACGGTGAAG
GATACCGCCT GGACGCCGAT GGCCAGCCTG TCCTATCGCT TCAGCCCCGA GCTGCTCGGC
TACGTGTCCT ATTCGGAAGG CTTCAAGGGC GGCGGCTTCA CCCAGCGCGT CTTCCCGCCC
TTCGCCTTCA TCCCGTCGTT CAAGCCGGAA ACCAGCACCA CCTATGAGGT CGGCTTCAAG
TCGGACCTGT TCGGCCGCAA GCTGCGGCTG AACGGCGCCG CCTTCCTGAA CGACTATGAC
GACCTGCAGA TCACCGTGAA CGACCCGACG CTGGGCTTCG CGCCGATCAT CCAGAATGCG
GCGAAGGCGC GGATCAAGGG CTTCGAGCTG GAGATGCAGG CGCGCCCGAT CGGCGGGCTG
CAGATCGACG CGGGCCTCGG CTATCTCGAC GCCAAGTATC GCCGGGTCGA CATCCGCGCG
CTCAACGCCG GCGTGACGAC CGCGACCAAG CTGCAGAATG CGCCGAAATG GACGCTGAGC
GCCGGCGTCG CCTACAATAT CCAGGCGGAC GGCATCGGCA GCTTCCAGCC GCGCGTCGAC
TGGTCCTACC GGTCGCGGGT CTACAACGAC GCGGTCAACA ACCCGCTGCT CGTCCAGGAC
GGCTATCATC TGGTCAACGC CTCGGTCGCC TGGACCGACG AGGACAAGCG CTGGGGCATC
ACCGCCGGCG TCAAGAACCT GACCAAGGAG GTCTATCTCG GATCGGGCTA TGCCGACTCC
TTCGGCGGCC TGGTCGAGGG CGTCTATGGC CGTCCGCGCG AATGGTATCT CAGCGCGCGC
TATTCCTTCT GA
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| Protein sequence | MNMARQNEMG AIAAPRRGRG LLLIGASLIG LAAPAGMASA QQAPAEAASA DAVDGVEVIT
VTARRRAESL QDTPIAISAV TSEGLTARGI DNVTQIGDFT PNVKFNSSVP VSASNATAAI
FIRGIGQNDY QLSADPGVGL YLDGVYISRG VGNVLDVLNV ERIEVLRGPQ GTLFGRNTIG
GAVSVVTKKP GDKLAGSLEL TTGRFNRIQA KGSIDVPLAE GVYSSFAGFY HKRDGYVKGV
VAGAPDLGDT DQLAGRFALR LEPSSDVTID LAVDGSRARE QSAPNVAIAI DENAPAAQVW
NAVYSGAPGI CANTADPSRF TDQRCFNNQW ALGPYRHGGT FTSVSGVFTN GNPKRYQSAS
NLNIWGASGT IEWKIADGIS FKSITAYRKV TGFWTRDSDH SPATIVETNS DWKQDQFSEE
VQLQGDVADG RFNWVVGGYY SSESGNHRDL VNIVDAVFLS GAVLDGKSLA FFGQGTYEIV
HNLNLTAGIR WTEDKKTFGN ANQYVVEAGF LTGAPFNPDG SGLQNGDPLM GPLGQRSTVK
DTAWTPMASL SYRFSPELLG YVSYSEGFKG GGFTQRVFPP FAFIPSFKPE TSTTYEVGFK
SDLFGRKLRL NGAAFLNDYD DLQITVNDPT LGFAPIIQNA AKARIKGFEL EMQARPIGGL
QIDAGLGYLD AKYRRVDIRA LNAGVTTATK LQNAPKWTLS AGVAYNIQAD GIGSFQPRVD
WSYRSRVYND AVNNPLLVQD GYHLVNASVA WTDEDKRWGI TAGVKNLTKE VYLGSGYADS
FGGLVEGVYG RPREWYLSAR YSF
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