Gene Swit_0945 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwit_0945 
Symbol 
ID5199874 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSphingomonas wittichii RW1 
KingdomBacteria 
Replicon accessionNC_009511 
Strand
Start bp1057062 
End bp1058318 
Gene Length1257 bp 
Protein Length418 aa 
Translation table11 
GC content70% 
IMG OID640580491 
Productsarcosine oxidase beta subunit family protein 
Protein accessionYP_001261450 
Protein GI148553868 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0665] Glycine/D-amino acid oxidases (deaminating) 
TIGRFAM ID[TIGR01373] sarcosine oxidase, beta subunit family, heterotetrameric form 


Plasmid Coverage information

Num covering plasmid clones29 
Plasmid unclonability p-value0.943396 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGATGC GCTATTCGGC GTGGACGGTT TTCAAACAGG GGCTGGGCGG CCAACGCGGC 
TGGAAGCCCG CCTGGCGGTC GCCCGACCCG AAGCCGGACT ATGAGGTCGT CGTCATCGGC
GGCGGCGGCC ATGGGCTGGC GACGGCCTAT TATCTGGCCA GGACCTACGG CATCCGCCGC
GTCGCGGTGC TGGAGAAGGG CTGGATCGGC GGCGGCAACA GCGGCCGCAA CACCACGGCG
ATCCGGTCCA ACTATTATTA CCGCGCCAGC GCCCGGATGT ACGAGCATTC GCTCAAGCTC
TACGAGAGGC TGTCGAAGGA GCTGAACTAT AATGTGATGT TCAGCCAGCG CGGCATGATC
TCGCTGGCCC ACAGCCCGCA CGATGTCGAA CTGGCGCATC GGCAGGCCGG CGCGATGCGG
CTCAACGGGG TGGACGCGGA CTTCCTGACG CCGGCCGAGA TCGCCCGGCG CGTGCCGATC
CTCGACATGT CGCCCGAGGC GCGCTTCCCG GTGTTCGGCG GGCTGCTCCA GAAGCGGGCG
GGCACCGCGC GGCACGACGC GGTGGTGTGG GGCTATGCCC GCGCCGCCGA TGCGCTGGGC
GTCGACATCA TCCAGAATTG CGAGGTGACC GGCTTCCGGC GCGGCGCCGA CGGCGCGGTG
ACCGGGGTCG AGACCTCGCG CGGGCCGATC GCGACGACGC GGATCGGCGT CGCGGTCGCC
GGCCATTCGA GCCGGCTCGC CGAGATGGCC GGCTTCCGCC TGCCGATCAC CAGCTATGCG
TTGCAGGCCT TCGTGTCGGA ACCGCTCAAG CCGGTGCTCG ACACCGTCAT CCTGTCGCCC
GCGACCGGGG TCTATATGAG CCAGTCCGAC AAGGGCGGCC TCGTCATCGG CGGCGGGCTG
GACCTCTATC CCTCCTATGC GCAGCGCGGC AACATGCCGG TGATCCGCAA CGTGCTGGGC
GCGGTCGCGG CGCAATATCC GGCGCTCGGC CGGGTCCGGT TGCTGCGGCA ATGGGCCGGC
ATCGTCGACG TCGTCCCCGA CAGCAGCCCG ATCATCGGCG CGTCGCCGGT GCCGGGGCTG
TTCCTCGACT GCGGCTGGGG CACCGGCGGG TTCAAGGCGA TCCCGGTCGG CGGCACGATG
CTGGCCCACC AGCTCGCCAC GCTGACGCCG CACGAACTGG CCGAGCCCTT CTCGCTCGAA
CGCTTCACCA CCGGCGCGCT CATCGACGAA GCCGCCGGCT CCGGCATCGC GCACTGA
 
Protein sequence
MKMRYSAWTV FKQGLGGQRG WKPAWRSPDP KPDYEVVVIG GGGHGLATAY YLARTYGIRR 
VAVLEKGWIG GGNSGRNTTA IRSNYYYRAS ARMYEHSLKL YERLSKELNY NVMFSQRGMI
SLAHSPHDVE LAHRQAGAMR LNGVDADFLT PAEIARRVPI LDMSPEARFP VFGGLLQKRA
GTARHDAVVW GYARAADALG VDIIQNCEVT GFRRGADGAV TGVETSRGPI ATTRIGVAVA
GHSSRLAEMA GFRLPITSYA LQAFVSEPLK PVLDTVILSP ATGVYMSQSD KGGLVIGGGL
DLYPSYAQRG NMPVIRNVLG AVAAQYPALG RVRLLRQWAG IVDVVPDSSP IIGASPVPGL
FLDCGWGTGG FKAIPVGGTM LAHQLATLTP HELAEPFSLE RFTTGALIDE AAGSGIAH