| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_0905 |
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| Symbol | |
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| ID | 5200788 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009511 |
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| Strand | - |
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| Start bp | 996576 |
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| End bp | 998822 |
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| Gene Length | 2247 bp |
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| Protein Length | 748 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640580451 |
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| Product | TonB-dependent receptor, plug |
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| Protein accession | YP_001261410 |
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| Protein GI | 148553828 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.000000091536 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.106879 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATGCGG GGAAAGAAAA ATCCGGAAAT GGGGGAAATC CGATGAAGCT GTCCGCCTGG
ACTATTTCGC TGCTGGCCGT CGCGGCCTGC CTGCAGTCGG GCGCCGCGTC CGCGCAGGAG
GCGAACGCCG GCAATGACGG GGTCGACGAC ATCATCGTGA CCGCGACGAA AAGGGCCGAT
GGGCAAACGC TGCAGAAAAC GGCTCTCGCC ATTTCGGCGC TCGGAGCGGC GCAGATCGAG
TCCAAGCAGA TCCGCGACCT TGCCGGCATC GGCAACAGTA TCCCCAATGT CAGCTTCGAC
TCGGGAGGAA CCTTCAAGGG GACGGCGAAC TTCTCGATCC GCGGATTGGG CGTGAACAGC
TCGATCCCGT CGCTGGAGCC CTCGGTCGGC GTCTTCGTCG ATGGCGTCTA TCAGGGGATC
AACGCCGGCA TCCTGTTCGA CACCTTCGAC CTCGAGAAGA TCGAAATCCT TCGCGGTCCG
CAGGGGCTGC TGTTCGGCCG CAACGTGACC GGCGGCGCGG TCCTCGTCAG CACCAAGCGG
CCGACGCGGG ACTTCTCGAT GTCGATGCGC GCAGGCATCG AGACCGGATC GAACGTGACC
GTCGCGGGAT CGGTTTCCGG CCCGATCGCC GGCGACAAGC TGCTCGGCAA GCTTGCCGTC
TACTACAATG ACGACGGCGG CTGGTTCACC AACTCCTTCA ACAACCAGAA GTACGGCGGG
TCCCGGACCT TCATCATCAG GCCCGCCGTC GAGTTCGAAC CGGCCGAGGG CCTCGACCTC
CTGCTGCGCT TCGAGCATGG CGACCAGAAG GGCGACGGCG CAGCGGCGCA GAACTTCGCG
CTCTACAGCC GCCACAGCTT CAAATTCTCG AACGATACGC CCGCCTACAG CCGGTCCAAC
TGGAACCAGG GCACCGCGGA GATGAACCTC GACGTCGGCT TCGGCTCCGG TCGCATCACC
AATGTGTTCG GCTGGCGGCA GTTCGAGCAG GCCGCGCGCG TCGATACTGA CGCTTCGCCC
CAGCCGCTCT CGGACTCCTA CACCTTCACC AAGCAGGAGC AGTTCAGCAA CGAACTGCGC
TATGCGGGCA GCTTTGCTGA TATCGTCGAC GTGACGACCG GGCTCTTCTA CTTCAAGCAG
AACCTCGACT ATCAGGACGC GCGCCGGGCC AACAACGCGC CGACGGCCGT CTATTCGGGC
GGCATCCAGG ATTCGCATAG CTGGGCATGG TTCTCGTCGG CCGACTTCCA TGTTGCCGAC
GGCCTGACCC TCAACACCGG CCTTCGCTAC TCGCGCGAGA GGAAGAAGGT GCGCATCGCG
AGCCAGGATA CGCCGACGGC GACCGGTACC GGCGTGACCT CGGTCGACAT CATCCCGGCC
GGCGCCTGCA ACATCGTCGC GCGCCAGTGC GTGTTCGATT TCCGGGATTC GAAGAGCTGG
TCGAGCTGGA CCCCCAAGGT CGGTTTCGAA TGGACGGTCG CGCCCAGCAA TCTTTTCTAT
GCCTTCTGGA CGAAGGGCGT GAGGAGCGGC GGCTATAATG TCCGCAACAG CTTCCAGTCG
GTCGCGCCCG GCCCGTTCGA GCCGGAAAAC GTCAGCAACT TCGAAATGGG CAACAAGCTG
CAATTGTTGG ACAAGCGCCT GACCTTCAAC AACGCGATCT ACTACCAGAA GGTCAAGGGG
CTGCAGCGAA GCGTCATCAT TGCGAACGGC GTCAACGGCA GCACGGCGGC CTTCATCCGC
AATACCGCGG ACGCGACGAT CTGGGGCGTC GAATCGGAAC TGCGCTTCAA CCCGACGCCG
GAACTGTCGC TGAATGCATC CGTCGGCTAC ACCCATGGCG AATATGACAA GATGTTCTTC
GACCTGACGG GCGACGGCGT CATCGACGCC AGGGACCTTG CGCTCGCGCT TCCGCGTCTT
TCGCCTTGGA CGGTCAGCGC GGGGTTCAGC TACACCCATC CGGTGGGCGA CCTCGGCGAC
GTCACGCTGG CGGCGGACTA TTCCTATCGC GACCGGTCAT TCTACAATGA CAGCAACACC
GGCGCTTTGA ACATCATGCA CATGGTCAAC GGAAGCATTT CCGTGCAGTC CGACGATAAG
CGCTGGACGG CATCGCTCTA TGGCAAGAAC CTTCTGAACA AGGTGCAGTT CGGCGGCGTG
ACGCCGATCC GTGGGCTTCC CGGAGCCACG CTCGCGCCGT TGGAAAAGGG GCGGGTGATC
GGCATCGACG TGAAATTCCA ATATTGA
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| Protein sequence | MDAGKEKSGN GGNPMKLSAW TISLLAVAAC LQSGAASAQE ANAGNDGVDD IIVTATKRAD
GQTLQKTALA ISALGAAQIE SKQIRDLAGI GNSIPNVSFD SGGTFKGTAN FSIRGLGVNS
SIPSLEPSVG VFVDGVYQGI NAGILFDTFD LEKIEILRGP QGLLFGRNVT GGAVLVSTKR
PTRDFSMSMR AGIETGSNVT VAGSVSGPIA GDKLLGKLAV YYNDDGGWFT NSFNNQKYGG
SRTFIIRPAV EFEPAEGLDL LLRFEHGDQK GDGAAAQNFA LYSRHSFKFS NDTPAYSRSN
WNQGTAEMNL DVGFGSGRIT NVFGWRQFEQ AARVDTDASP QPLSDSYTFT KQEQFSNELR
YAGSFADIVD VTTGLFYFKQ NLDYQDARRA NNAPTAVYSG GIQDSHSWAW FSSADFHVAD
GLTLNTGLRY SRERKKVRIA SQDTPTATGT GVTSVDIIPA GACNIVARQC VFDFRDSKSW
SSWTPKVGFE WTVAPSNLFY AFWTKGVRSG GYNVRNSFQS VAPGPFEPEN VSNFEMGNKL
QLLDKRLTFN NAIYYQKVKG LQRSVIIANG VNGSTAAFIR NTADATIWGV ESELRFNPTP
ELSLNASVGY THGEYDKMFF DLTGDGVIDA RDLALALPRL SPWTVSAGFS YTHPVGDLGD
VTLAADYSYR DRSFYNDSNT GALNIMHMVN GSISVQSDDK RWTASLYGKN LLNKVQFGGV
TPIRGLPGAT LAPLEKGRVI GIDVKFQY
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