Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swit_0899 |
Symbol | |
ID | 5200540 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingomonas wittichii RW1 |
Kingdom | Bacteria |
Replicon accession | NC_009511 |
Strand | - |
Start bp | 989579 |
End bp | 991873 |
Gene Length | 2295 bp |
Protein Length | 764 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 640580445 |
Product | TonB-dependent receptor |
Protein accession | YP_001261404 |
Protein GI | 148553822 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.00548484 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.114309 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACTATG CGCACCGCTC GGTAGGGGCG GTTATCGCGA TGGCGTCCCT TGTCGGGGTG GCCGCCCATG CCAAGGGCGT CGGGGCGAAA GAAGAGGGAT ATGGTACGGC CGCCGTCGAA ACCCTCGAAG CCGATGCGGG AGATGCCATC GTCGTCACCG CGCAGCGCCG CGTGCAGAAA TTGCAGGATG TCGGCATCGC GGTAAGCGCA TTCAGCGGCG AGCAGTTGCG TACCCGCCAG ATCTCCAGCA GCATCGACGT CGCACGGATG ACGCCCGGCG TCTTCGCTTC GTCCTCGAAC GGTGGGCAAA CCGCCAGCAT TTCCATTCGC GGCGTGACCC AGAACGACAG CTCGGACGCC GTCGAGGGTC CCGTTGCCGT CTATGTGGAC GAAACCTACG TCCCCAGCCT GCAGGGCCAG GGCTTCGGTC TCTTCGACAT CGAGCGCGTC GAGGCTCTCA AGGGGCCGCA GGGCACGTTG TTCGGCCGCA ATGCCACGGG CGGGCTCGTC AACTTCGTGA TCGCCAAACC GTCCGACACG GTGACGGGCT ACGCGAACGG CAGCTATGGG AGCTTCGACA GCGTCAAGCT GGAAGGCGCG ATCGGCGGGC CGATCGCCGA AACGGTCCAG GGGCGCATTT CGCTTCTCTA CAATCGCAAC AATGGCTGGT TGAAGAACCT GTATCCGGGA AAGCCGGACG TCGGCGGAGA GGATACATTG GGCGGCCGCG CCCAGCTGCA ATGGCAAGCG ACGGACGCGC TCAAGGTGCG GGCGACCGCT TCCGCCGTGC GGAGCGATCT GTCCACCGGC GCCTATAACT CCATTTCGAC GCAGCCCGTG TTCGACGGTC AGGGACGCGT GGTCGGTGCG GACAGGGTCT CCGGGCCGAC GGCGCTGGGC TTTACGCCGC TTCCCGGCAG CAGGCTGGAG GTCAACCACG ACTTCGCCTG TTCCGATTGT GGCCGCACGA GGCTTTATGA CGCGGCGCTC CACGTCGATT ACGATGCCGG GGGCGCCCAG ATCAGCGCGA TCACCAACTG GAAGCGCATC ACCAAGGCCC TGCTGATCGA CGTGGACAGT TCGCCCGTCA ATTTGGTGGA CGTGGGCCAG AACGCCCAGA CGGAGAGCTT CTCGCAGGAG CTTCGCGCCA CCGGGAAGGC CGACAGGGCC GTCTGGAACC TCGGCGTCTA TTATCTGCAG ATACACACGC TCGCCCAGAT GGGCTTTCTC GCCCGACCCA ATGGCATACT GGCGGGCGCG CTGGGTGTTT CCGGCACCGG CGCTGATCTC GCCAATCTCC AGGACCTCTG GACGCGGTCA TTCTCCGGTT TCGGGCAGAT CGAATATAAG CTCGCGCCCA GACTGAGCGG CACGATCGGC CTCCGCGTCA TTCACGAATG GCAGCGCTAC GATTTCCAAT CGAGCCAGTT CCAGAACCAG AATGACTACA AGCTGGATAC CGCCATCGCG GTGGCCACGC TTCAGCCTTC CTATGCGAAC AAGCGGAGCG ATAGTTTCTG GGCGGGCAAG GCCGCGCTCG AATATCATGC CAATCGCGAC ATGCTGTTGT ACGCCTCGAT CAATCGCGGG GCGAAGGGCG GCAACTACAA CTCCAAATTG CCCGATGGAA GTCCGCCGCT CTCGCCGGAC GAGTTCGCCT ACAAGGGCGA AACGCTGCTC GCTTATGAGG GCGGCATGAA GTCGACGTGG CTGGATGGAA AGGCCACGTT CAACCTGTTG GGGTTCATCT ACGATTATTC CAATTACCAG GCCTTCACCT TTTCCAACGC CTCCGGCTTC GTGCAGAACA GGGATGCGAA CCTCTATGGC GGCGAGGCCG AGTTCACCCT TCGGCCGGTC GAGGGCCTGG AACTGAGCGG CGGCCTCTCG CTGCTGCATG CCAAGGTCAA GAACGTGCAG GTCGCGACCG GTGTCTATAA AGACGTGCGG CCGACATTCG CCCCGAAGCG GCAGGCCAAC GGGCGCATCA GCTATCGTCC TCCCCTGGAG GTCGCCGGCG GCCACATCAA CCTGGCCGTC GATGGCTATT CGACATCGTC CTTCTACCAG AACATCCGCA ATTTCGCGGC GCACAAGATC AGCGGCCACA CGATCTTCGG TGCGCAGGTC GGATGGGAGA GCGCGTCGGG CTTCTCGCTG ACCGGCGCCG TATCCAACCT GTTCGACAAG CGATACGAGA TCACGGGCTT CGATCTGTCG ACGCTTTGCG GCTGCAGCGA GGTTGCCTAC GGCAAGCCGC GCTGGTGGAC GATTTCCGCG GGATTTCGCT TCTGA
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Protein sequence | MNYAHRSVGA VIAMASLVGV AAHAKGVGAK EEGYGTAAVE TLEADAGDAI VVTAQRRVQK LQDVGIAVSA FSGEQLRTRQ ISSSIDVARM TPGVFASSSN GGQTASISIR GVTQNDSSDA VEGPVAVYVD ETYVPSLQGQ GFGLFDIERV EALKGPQGTL FGRNATGGLV NFVIAKPSDT VTGYANGSYG SFDSVKLEGA IGGPIAETVQ GRISLLYNRN NGWLKNLYPG KPDVGGEDTL GGRAQLQWQA TDALKVRATA SAVRSDLSTG AYNSISTQPV FDGQGRVVGA DRVSGPTALG FTPLPGSRLE VNHDFACSDC GRTRLYDAAL HVDYDAGGAQ ISAITNWKRI TKALLIDVDS SPVNLVDVGQ NAQTESFSQE LRATGKADRA VWNLGVYYLQ IHTLAQMGFL ARPNGILAGA LGVSGTGADL ANLQDLWTRS FSGFGQIEYK LAPRLSGTIG LRVIHEWQRY DFQSSQFQNQ NDYKLDTAIA VATLQPSYAN KRSDSFWAGK AALEYHANRD MLLYASINRG AKGGNYNSKL PDGSPPLSPD EFAYKGETLL AYEGGMKSTW LDGKATFNLL GFIYDYSNYQ AFTFSNASGF VQNRDANLYG GEAEFTLRPV EGLELSGGLS LLHAKVKNVQ VATGVYKDVR PTFAPKRQAN GRISYRPPLE VAGGHINLAV DGYSTSSFYQ NIRNFAAHKI SGHTIFGAQV GWESASGFSL TGAVSNLFDK RYEITGFDLS TLCGCSEVAY GKPRWWTISA GFRF
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