| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_0897 |
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| Symbol | |
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| ID | 5197086 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009511 |
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| Strand | + |
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| Start bp | 987443 |
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| End bp | 988270 |
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| Gene Length | 828 bp |
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| Protein Length | 275 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 640580443 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_001261402 |
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| Protein GI | 148553820 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 0.216969 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.388897 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAGGTAA TTATGTCTTT GGAATCCCGA GGCGCCGTCA CCCGGCCCGG CAGCGCGATC
GGTCGCGCCG GGCTGGTCAC CGCGGGGGGC GCCGGCATCG GCCGGGCAAT CGCCCTGGAA
TGGGCGGCCG AGGGCGGCTC CCTGGTCGTC GGCGATCTCG ACCGGGAGGC GGCGATCGAG
ACCGCGCGCC AGGTCGAGCA GATGGGCGGG CGGGCCATCG GCCTCGGGAT GGACGTGACC
GATCCGGACG CCATGCCGGC GATGATCGAG GCGCTCGGGC AACTCGGCGA TCCCCTCCAC
GCCCTGTTCA ACGTCGCCGG CGCCAGCCTG GCGAAGCGCG TCGACGAAAT GGTCGATGCC
GACTGGGACG GCGTGCTCGA TCTCAACCTG AAATCGATCT ACCGCTGTTC CAAGCCGGTG
ATAGAGGTCC TCCGCCGCAA CGGCGGCGGC GCCATCGTCA ACGTCGCTTC GACGGCGGGC
ATCCTCGCCG AGAATCGATG CTCCGCCTAC ACCGCCGCGA AAGGCGGAGC GGTCATGCTG
ACCCGGAACA TGGCGATCGA TTTCGCCCGC GACAGTATCC GGGTGAACGC CGTCTGCCCC
GGCAGCACGA TGACGCCACG CATCCAGGGA TGGCTCGACC GCCACCCCGG GCACGAGGAT
CTCATGGAAC GGATTTGCCC GATGAAGCGC TATGCGCGCC CCGAAGAGGT GGCCAAGCCC
TCCATCTTCC TCGCCTCGGA CGCCGCATCC TACATAACCG GGGCCTCGCT GGTCATCGAC
GGCGGCCTCA CCGCAGGCGT CCGCTTCTCC ATTTTCGAGG ATGCCTGA
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| Protein sequence | MEVIMSLESR GAVTRPGSAI GRAGLVTAGG AGIGRAIALE WAAEGGSLVV GDLDREAAIE
TARQVEQMGG RAIGLGMDVT DPDAMPAMIE ALGQLGDPLH ALFNVAGASL AKRVDEMVDA
DWDGVLDLNL KSIYRCSKPV IEVLRRNGGG AIVNVASTAG ILAENRCSAY TAAKGGAVML
TRNMAIDFAR DSIRVNAVCP GSTMTPRIQG WLDRHPGHED LMERICPMKR YARPEEVAKP
SIFLASDAAS YITGASLVID GGLTAGVRFS IFEDA
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