Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swit_0838 |
Symbol | |
ID | 5198031 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingomonas wittichii RW1 |
Kingdom | Bacteria |
Replicon accession | NC_009511 |
Strand | - |
Start bp | 934091 |
End bp | 936445 |
Gene Length | 2355 bp |
Protein Length | 784 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 640580382 |
Product | TonB-dependent receptor |
Protein accession | YP_001261343 |
Protein GI | 148553761 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.543074 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCCAATT CCACCATTGC CCGGCTGCTT GCGGCCAGTT GCCTGACGGT CGTCGCGAGC CAGGGGCTGA CCACCCCGCT CCACGCGGCC GAAGCGTCGT CCGGGGTCGC GGACGACCCG GCCGAGATCA TCGTCACCGC CAACAAGCGC GAGGAAAGCG CGCGGACCGT GCCGATGTCG CTGACCATCG CCAGCGGCGA CAAGCTGCTC AGCGCCGGCG TCCGCTCGCC CGAGGACCTG GTGAAGATCG TGCCCGGCCT CACCGTCCAG CCGTCGCCGT TCAACACGCC GGTCTACACG ATGCGCGGCA TCGGCTTCTA CGAGACCAGC CTGTCGGCCG CGCCCACCGT CGCGGTCTAT GTCGACGAGG TGCCGCTACC GTTCAGCGCG ACGACCAAGC TCGCGGTGCT CGACCTCCAG CGGGTCGAGG TGCTCAAGGG GCCGCAGGGG ACGCTGTTCG GCCAGAACAC GACCGGCGGC GCGATCAACT ATATCGCCGC GCAGCCGACC TCCACGCTCG CGGCGGGCGC CGATCTCACG CTGTCGCGTT TCTCCACCTA TGACGCGCAG GGTTTCGTCA GCGGCCCGCT GAGCGACAAG GTCTCGGCCC GCGTCGCGGC GCGCGTCGTC CAGGGCGGCG CCTGGCAGAA GAGCATCACC CGCAACGACG ATCTCGGCAA GGTCAAGCAG CTCCAGGGCC GCGCCATCGT CACCTGGGAC GCCGGGCCCG ACTTCACCGT CCGCGCGATG GTGAGCGCCT GGCAGGACCG GGGCGACACC CAGGCGCCCC AGCTGCTGGT CGACAGCTGC GGGGCGTCGA CCGCCGGCAC CTGCGGCAAC CCGGAGGCCG CGGCGTTCCG CGCCTATCCG CGACCGCCGC ACGACAATCG CTCGGCCGAC TGGGGGGCGG GCGTCTACGG CCGCGCGAAC AAGCGCGACG ACAGCTTCGT CCAGGGATCG CTGCGCCTCG AAAAGGGGCT GACCGACAAT CTCAAGCTGA TCTCGATCAC CTCCTACTCG CGCTACAAGA CCGATTCGGT GCAGGACTTC GACGGCACCA TGCTCAACTC GGCCGACAAC AACACGACCG GCTATATCCA CGCCTTCTCG CAGGAGCTGC GGCTCAACGC CGACTTCGAC AAGGTCCGGA TCACCTCGGG CCTCAACTAT GACCGGTTCA ACGTCTACGA CCGGATCTTC TACAATATCG GCCAGTCGGT CTCGGCCGAC CCGCTCTATT TCGTGCCCGG CCATCTGCTG CCCGAATATA CCTACAGCTT CACCCATCAG ATCTCGAAGA CCTATGCCGC CTTCCTCAAC GGCGAGGTCC AGCTCTCCGA CCGGGTGAAG GTGACCGCCG GCGCGCGCTA TACCAATGTG AAGCGTTCGT TCAGCGGCTG CTCCTTCGTG CTCGGCGTCA CCGCCGACTG GTTCAACCAG ATCTTCGGGA CCAGCCTCGT CGACGGGCAA TGCTCGGTGT TCACGCCGAA CTTCCCGCAG ACCTACGATC CGCTGCTGTT CGACAAGCTC AACGAGGACA ATCTCTCGTG GAACGCGGTC GTCGACTATA AGCTCAGCGA CAAGGCGATG GTCTATGGCC GCATCGCCAA GGGCTACAAG GCGGGCAGCT TCCCGACCGC TTCGGTGGTC AGCTATACCG GCCTGCTGCC GGTCCACCAG GAATCGGTGC TCACCTACGA ACTGGGCCTC AAGGCGTCGC TGCCCGACCG GCTCGGCGAG CTGACGATCG CGGGCTTCTA CAACGACTAC AAGAACAAGC AGCTCCGCAG CCGCAAGCCC GATCCGCTGT TCGGCACGCT CGACGGCCTG GTCCAGATCC CGAGCAGCTG GAGCAAGGGC ATCGAGGCGT CGCTGACCCT GCGTCCGGTC GAGGGGCTGA CGCTCAGCGC GGGCGGCACC TATCTCGAAA CGCGGGTGAC CAAATATGAC GGTTTCGACG CCTTCGGGAC GCCGACCAAC TTCAAGGGGC AGCGCTTCCC CTATGCGCCC AAATGGTCGC TGGTCGGCGA TGCCGAATAT CGCTTCCCGC TCGGCACCGG GCATGAAGGC TATGCCGGCG TCTCGGCGGT CTACAACAGC GCGACCTCCT CGGTGCTGTC GAACCGCGAC ACCGCCTTCA CCGCCGCCGA TACGCGACAG GTGATCAAGG CCTATACGCT GATCGACGTG CGCGCGGGCG TCTCCTTCGG CGAGAACAAG GTGAAGGTCG GCGCCTTCGT CCGCAACCTC ACCAACAAAT ATTACTGGAC CAACGTTCTC GACAGCCTGT CGTCGATCGT CCGCTTCACC GGCATGCCCC GGACCTACGG GCTGCAGGCG AGCTGGCGCT ACTGA
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Protein sequence | MANSTIARLL AASCLTVVAS QGLTTPLHAA EASSGVADDP AEIIVTANKR EESARTVPMS LTIASGDKLL SAGVRSPEDL VKIVPGLTVQ PSPFNTPVYT MRGIGFYETS LSAAPTVAVY VDEVPLPFSA TTKLAVLDLQ RVEVLKGPQG TLFGQNTTGG AINYIAAQPT STLAAGADLT LSRFSTYDAQ GFVSGPLSDK VSARVAARVV QGGAWQKSIT RNDDLGKVKQ LQGRAIVTWD AGPDFTVRAM VSAWQDRGDT QAPQLLVDSC GASTAGTCGN PEAAAFRAYP RPPHDNRSAD WGAGVYGRAN KRDDSFVQGS LRLEKGLTDN LKLISITSYS RYKTDSVQDF DGTMLNSADN NTTGYIHAFS QELRLNADFD KVRITSGLNY DRFNVYDRIF YNIGQSVSAD PLYFVPGHLL PEYTYSFTHQ ISKTYAAFLN GEVQLSDRVK VTAGARYTNV KRSFSGCSFV LGVTADWFNQ IFGTSLVDGQ CSVFTPNFPQ TYDPLLFDKL NEDNLSWNAV VDYKLSDKAM VYGRIAKGYK AGSFPTASVV SYTGLLPVHQ ESVLTYELGL KASLPDRLGE LTIAGFYNDY KNKQLRSRKP DPLFGTLDGL VQIPSSWSKG IEASLTLRPV EGLTLSAGGT YLETRVTKYD GFDAFGTPTN FKGQRFPYAP KWSLVGDAEY RFPLGTGHEG YAGVSAVYNS ATSSVLSNRD TAFTAADTRQ VIKAYTLIDV RAGVSFGENK VKVGAFVRNL TNKYYWTNVL DSLSSIVRFT GMPRTYGLQA SWRY
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