Gene Swit_0838 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwit_0838 
Symbol 
ID5198031 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSphingomonas wittichii RW1 
KingdomBacteria 
Replicon accessionNC_009511 
Strand
Start bp934091 
End bp936445 
Gene Length2355 bp 
Protein Length784 aa 
Translation table11 
GC content66% 
IMG OID640580382 
ProductTonB-dependent receptor 
Protein accessionYP_001261343 
Protein GI148553761 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG1629] Outer membrane receptor proteins, mostly Fe transport 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.543074 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCCAATT CCACCATTGC CCGGCTGCTT GCGGCCAGTT GCCTGACGGT CGTCGCGAGC 
CAGGGGCTGA CCACCCCGCT CCACGCGGCC GAAGCGTCGT CCGGGGTCGC GGACGACCCG
GCCGAGATCA TCGTCACCGC CAACAAGCGC GAGGAAAGCG CGCGGACCGT GCCGATGTCG
CTGACCATCG CCAGCGGCGA CAAGCTGCTC AGCGCCGGCG TCCGCTCGCC CGAGGACCTG
GTGAAGATCG TGCCCGGCCT CACCGTCCAG CCGTCGCCGT TCAACACGCC GGTCTACACG
ATGCGCGGCA TCGGCTTCTA CGAGACCAGC CTGTCGGCCG CGCCCACCGT CGCGGTCTAT
GTCGACGAGG TGCCGCTACC GTTCAGCGCG ACGACCAAGC TCGCGGTGCT CGACCTCCAG
CGGGTCGAGG TGCTCAAGGG GCCGCAGGGG ACGCTGTTCG GCCAGAACAC GACCGGCGGC
GCGATCAACT ATATCGCCGC GCAGCCGACC TCCACGCTCG CGGCGGGCGC CGATCTCACG
CTGTCGCGTT TCTCCACCTA TGACGCGCAG GGTTTCGTCA GCGGCCCGCT GAGCGACAAG
GTCTCGGCCC GCGTCGCGGC GCGCGTCGTC CAGGGCGGCG CCTGGCAGAA GAGCATCACC
CGCAACGACG ATCTCGGCAA GGTCAAGCAG CTCCAGGGCC GCGCCATCGT CACCTGGGAC
GCCGGGCCCG ACTTCACCGT CCGCGCGATG GTGAGCGCCT GGCAGGACCG GGGCGACACC
CAGGCGCCCC AGCTGCTGGT CGACAGCTGC GGGGCGTCGA CCGCCGGCAC CTGCGGCAAC
CCGGAGGCCG CGGCGTTCCG CGCCTATCCG CGACCGCCGC ACGACAATCG CTCGGCCGAC
TGGGGGGCGG GCGTCTACGG CCGCGCGAAC AAGCGCGACG ACAGCTTCGT CCAGGGATCG
CTGCGCCTCG AAAAGGGGCT GACCGACAAT CTCAAGCTGA TCTCGATCAC CTCCTACTCG
CGCTACAAGA CCGATTCGGT GCAGGACTTC GACGGCACCA TGCTCAACTC GGCCGACAAC
AACACGACCG GCTATATCCA CGCCTTCTCG CAGGAGCTGC GGCTCAACGC CGACTTCGAC
AAGGTCCGGA TCACCTCGGG CCTCAACTAT GACCGGTTCA ACGTCTACGA CCGGATCTTC
TACAATATCG GCCAGTCGGT CTCGGCCGAC CCGCTCTATT TCGTGCCCGG CCATCTGCTG
CCCGAATATA CCTACAGCTT CACCCATCAG ATCTCGAAGA CCTATGCCGC CTTCCTCAAC
GGCGAGGTCC AGCTCTCCGA CCGGGTGAAG GTGACCGCCG GCGCGCGCTA TACCAATGTG
AAGCGTTCGT TCAGCGGCTG CTCCTTCGTG CTCGGCGTCA CCGCCGACTG GTTCAACCAG
ATCTTCGGGA CCAGCCTCGT CGACGGGCAA TGCTCGGTGT TCACGCCGAA CTTCCCGCAG
ACCTACGATC CGCTGCTGTT CGACAAGCTC AACGAGGACA ATCTCTCGTG GAACGCGGTC
GTCGACTATA AGCTCAGCGA CAAGGCGATG GTCTATGGCC GCATCGCCAA GGGCTACAAG
GCGGGCAGCT TCCCGACCGC TTCGGTGGTC AGCTATACCG GCCTGCTGCC GGTCCACCAG
GAATCGGTGC TCACCTACGA ACTGGGCCTC AAGGCGTCGC TGCCCGACCG GCTCGGCGAG
CTGACGATCG CGGGCTTCTA CAACGACTAC AAGAACAAGC AGCTCCGCAG CCGCAAGCCC
GATCCGCTGT TCGGCACGCT CGACGGCCTG GTCCAGATCC CGAGCAGCTG GAGCAAGGGC
ATCGAGGCGT CGCTGACCCT GCGTCCGGTC GAGGGGCTGA CGCTCAGCGC GGGCGGCACC
TATCTCGAAA CGCGGGTGAC CAAATATGAC GGTTTCGACG CCTTCGGGAC GCCGACCAAC
TTCAAGGGGC AGCGCTTCCC CTATGCGCCC AAATGGTCGC TGGTCGGCGA TGCCGAATAT
CGCTTCCCGC TCGGCACCGG GCATGAAGGC TATGCCGGCG TCTCGGCGGT CTACAACAGC
GCGACCTCCT CGGTGCTGTC GAACCGCGAC ACCGCCTTCA CCGCCGCCGA TACGCGACAG
GTGATCAAGG CCTATACGCT GATCGACGTG CGCGCGGGCG TCTCCTTCGG CGAGAACAAG
GTGAAGGTCG GCGCCTTCGT CCGCAACCTC ACCAACAAAT ATTACTGGAC CAACGTTCTC
GACAGCCTGT CGTCGATCGT CCGCTTCACC GGCATGCCCC GGACCTACGG GCTGCAGGCG
AGCTGGCGCT ACTGA
 
Protein sequence
MANSTIARLL AASCLTVVAS QGLTTPLHAA EASSGVADDP AEIIVTANKR EESARTVPMS 
LTIASGDKLL SAGVRSPEDL VKIVPGLTVQ PSPFNTPVYT MRGIGFYETS LSAAPTVAVY
VDEVPLPFSA TTKLAVLDLQ RVEVLKGPQG TLFGQNTTGG AINYIAAQPT STLAAGADLT
LSRFSTYDAQ GFVSGPLSDK VSARVAARVV QGGAWQKSIT RNDDLGKVKQ LQGRAIVTWD
AGPDFTVRAM VSAWQDRGDT QAPQLLVDSC GASTAGTCGN PEAAAFRAYP RPPHDNRSAD
WGAGVYGRAN KRDDSFVQGS LRLEKGLTDN LKLISITSYS RYKTDSVQDF DGTMLNSADN
NTTGYIHAFS QELRLNADFD KVRITSGLNY DRFNVYDRIF YNIGQSVSAD PLYFVPGHLL
PEYTYSFTHQ ISKTYAAFLN GEVQLSDRVK VTAGARYTNV KRSFSGCSFV LGVTADWFNQ
IFGTSLVDGQ CSVFTPNFPQ TYDPLLFDKL NEDNLSWNAV VDYKLSDKAM VYGRIAKGYK
AGSFPTASVV SYTGLLPVHQ ESVLTYELGL KASLPDRLGE LTIAGFYNDY KNKQLRSRKP
DPLFGTLDGL VQIPSSWSKG IEASLTLRPV EGLTLSAGGT YLETRVTKYD GFDAFGTPTN
FKGQRFPYAP KWSLVGDAEY RFPLGTGHEG YAGVSAVYNS ATSSVLSNRD TAFTAADTRQ
VIKAYTLIDV RAGVSFGENK VKVGAFVRNL TNKYYWTNVL DSLSSIVRFT GMPRTYGLQA
SWRY