| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_0798 |
|---|
| Symbol | |
|---|
| ID | 5197561 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | - |
|---|
| Start bp | 883632 |
|---|
| End bp | 885470 |
|---|
| Gene Length | 1839 bp |
|---|
| Protein Length | 612 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 640580342 |
|---|
| Product | peptidase C14, caspase catalytic subunit p20 |
|---|
| Protein accession | YP_001261303 |
|---|
| Protein GI | 148553721 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGGCTA TGGGAATGTC TATCCACATC GGGCTCAACA ACCTCGATGT CTCATCCTAT
GGCGAGCAGA CCGTGCTCGC CGGTTGCATC AACGATGCCG ACTCGATGCA GAGCCTGGCC
GCGGGCCAGG GTTTCCAGAC CCGGCGGATG GTCGACGAGG AGGCGACCGC CGATGCGGTG
ATCGAGGCGA TCTCGGACGC GGCCAACACG CTGCGCTCGG GCGACATGCT GTTCCTCACC
TATTCCGGCC ATGGCAGCCA GGTGAGCGAC GTCGACGGTG ACGAGGCGGA CGGCCTCGAC
GAGACCTGGT GCCTCTACGA CCGGATGCTG ATCGACGATG AACTCAGCCA GCTCTGGTCG
CGGTTCGAGG CCGGGGTGCG GATCCTGATG CTGTCCGACA GCTGCCACAG CGGCACGGTC
GCCAAGCTGA TCAAGGAGCG CAAGCTCGCC GCGTCGCCGC AGCTTCGCGA CATGTTCAGC
CCGACGGCGA TCAAGCCGCC CAAGGTGACG ACGCGCGCGC TGGCCGTGCG CGGCGGCGGG
ACCCCGCCGC CGGCCGTCGC GATCGCCGCC CGGCCAGCTC CGCTCGCGCC GGTCGCCGCC
GACGCGCAGC GCATCCCGCC GGCTGCGGCG GGCGAGGTGA CGTTCCGCTG GCTCGATCCT
TCGGCCCGGC GCCGCAGCAT CGAGAAGAAT GGCGGCCTCT ACGGCACGCT CCAGCGGCTG
ATCGGCCGCG ACGTCGACGA CGGCGTCCAG GCATCGGTGA TCCTGATCTC CGGTTGCCAG
GACAACCAGC TCTCCGCCGA TGGCGACGGC AACGGCCTGT TCACCGAAAC CCTGCTCAAG
GTCTGGAACG ACGGCGGCTT CTCGGGCGAC TATCGCGCCT TCCACAAGGC GATTCTCGAC
CTGATGCCGT CGACCCAGTC GCCCAACTAC TTCACCACCG GGGCGTCCAA TCCGACCTTC
GAGGCACAGC ATCCCTTCAC CCTGACGACC GACGCGACCA ACGAGCCGGT CGCCTCCTCG
CTGTGGGTGA CGGGCCCGGA GACGATGGAC CGTTCGGACG CGCCGCCGAC CTTCCGCGTC
AATGGCGGTC CCAATCCCTA TTTCATCTTC GAGATCACCA GCGAGGCGCG GCTGTTCGAC
ACCGGGAATG TCGGCGACGG GGAGCGGACC GACGACAATT TCTACGGGTC GTGGAGCGAC
TCCGCCCATC AGAGCGGCAC CGAATATAGC TTGCCGCAGG CGGTGTGGGA CCGGCTGAAG
CAGGCCGACA CGCTCTATTA CCGGATCGGT TCGACCGAGG CGTCGACCGG CTGGGGCAAC
TACATGGTCT CGACCCCCGA CCAGCAATAT GACCTGGCGC CGTCGATCTC GCTGAGCGGC
GACGCCGTGT CGGGCGAGGA GGAGCAGCCG GTCGACGACG GCGCGGCGAG CGGCCTGCCG
TCGATCAGCG GGCCCGACAG CATGGCGGCG GACGATCCAG CGCCCAGCTT CACCATCGAT
CGCGCCGGCG CGCCCTATGC CGTGGTCGAG GTGGCGACCG ACGGCGCGCT GTTCGCCGAC
GACACCAGCC GCACCGACGA CAATTTCTAC GCGACCTGGC AGGACAGCGA CCTGCTGACC
GGCGACCAGT GGGACATGCC CGACGCGGTG TGGAGCCGGC TCGCGCCCGC CGGTGCGATC
TACTATCGCG TGGGAACGAC GACCAGCGAG ACCGGCTGGG ACAATTACAC GGTCTCGACC
GAGGATGGCG ACGGCGACCA GGCGCCGATG ATCTCGGTCG GCGCGACGCG CAGCCGCACG
AAGAACAGGC CGAGGGCGCT CGCGCCCGCC ATGGCCTGA
|
|---|
| Protein sequence | MMAMGMSIHI GLNNLDVSSY GEQTVLAGCI NDADSMQSLA AGQGFQTRRM VDEEATADAV
IEAISDAANT LRSGDMLFLT YSGHGSQVSD VDGDEADGLD ETWCLYDRML IDDELSQLWS
RFEAGVRILM LSDSCHSGTV AKLIKERKLA ASPQLRDMFS PTAIKPPKVT TRALAVRGGG
TPPPAVAIAA RPAPLAPVAA DAQRIPPAAA GEVTFRWLDP SARRRSIEKN GGLYGTLQRL
IGRDVDDGVQ ASVILISGCQ DNQLSADGDG NGLFTETLLK VWNDGGFSGD YRAFHKAILD
LMPSTQSPNY FTTGASNPTF EAQHPFTLTT DATNEPVASS LWVTGPETMD RSDAPPTFRV
NGGPNPYFIF EITSEARLFD TGNVGDGERT DDNFYGSWSD SAHQSGTEYS LPQAVWDRLK
QADTLYYRIG STEASTGWGN YMVSTPDQQY DLAPSISLSG DAVSGEEEQP VDDGAASGLP
SISGPDSMAA DDPAPSFTID RAGAPYAVVE VATDGALFAD DTSRTDDNFY ATWQDSDLLT
GDQWDMPDAV WSRLAPAGAI YYRVGTTTSE TGWDNYTVST EDGDGDQAPM ISVGATRSRT
KNRPRALAPA MA
|
|---|
| |