| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_0786 |
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| Symbol | |
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| ID | 5197449 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009511 |
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| Strand | - |
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| Start bp | 869078 |
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| End bp | 870631 |
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| Gene Length | 1554 bp |
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| Protein Length | 517 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 640580330 |
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| Product | substrate-binding region of ABC-type glycine betaine transport system |
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| Protein accession | YP_001261291 |
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| Protein GI | 148553709 |
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| COG category | [E] Amino acid transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1174] ABC-type proline/glycine betaine transport systems, permease component
[COG1732] Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 0.233419 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGATCGGCG GCAGCACCGG CTGGGGCGAG CTGGCGGGGC TCGCCCAGGC GCATCTGCTG
CTCAGCGGCT GCGCCGTCAT CCTCGCCGTC GCGGCGGGCG TTCCGCTCGC GATCGTCGCG
GCGCATGGCC GGCGGGTCAG GGGGCCGCTG CTCGCCGTCG TCGGGCTGAT GCAGACCATA
CCCGGCCTGG CGCTGCTCGC GCTCTTCTAT CCGCTGCTGC TGGTGCTCGG GCGGGCGAGC
GGGCTGGCGA TCCCGGCGCT CGGCTTCCTG CCCGCGCTGC TGGCGCTGTG CGTCTATGCG
CTGTTGCCGA TCCTGCGCAA CGGGGTGGCG GCGATCGACG GCATCGATCC GGCCCTGAAG
GAAGCGGCCG ATGGCGTCGG CATGACCCGC CGGCAGAAAT TGTGGCTGGT CGAGCTGCCG
CTCGGCGCGC CGGTGATCCT CGCCGGCATC CGCACCGCCG CGGTCTGGAC GATCGGCACG
GCGACGCTGG CGACGACGAT CGGCCAGCCG AGCCTCGGCG ACCTGATCTT CTCGGGGTTG
CAGACCGAGG ACTGGCAGCG GGTGCTGATC GGCTGCTTCG CGGCGGCGGC GCTGGCGCTG
CTGGTCGACG CCGTCCTCGC GCTCGTCGAG AGCGGCCTTG AGGCCCGCTC GCGCCCGCGC
CTGATCGCTG GCCTCGCCGT GCTCCTGCTT GCCGTGGCTG CGGCCTTCGC GCCGCTGCCG
AGGGGGGACG CCGCGCGGAC CGGCGATGTC GTCGTCATCG GCGCCAAGAA TTTCTCCGAG
CAATATATCC TCGCCGAGGC GATCGAGCAG CGGCTCCGGG CGGCGGGCTA TCGCACCGCG
CGGCGCGACA ATCTCGGTTC GGCGATCGCC TATCGCGCGC TCGCCGCCGG GGATATCGCC
GTCTATGTCG ACTATTCGGG CACGCTCTGG AGCAACGTCC TCGGCCGCAC CGACACGCCG
CCGCCCGACG TCATGCTGCG CCGGCTGGAG CGCGATCTGG CGGCGCGCGA CGGCGTCCGG
CTGCTCGGCG CGCTCGGTTT CGAAAATGCC TATACATTTG CGATGAAGCG CGATCGGGCG
CGGGCGCTCG GCATCGCCAC GCTCGAGGAT CTCGCCCGCG CGGCGCCCCG GCTGCGGCTG
GCGAGCGACC TCGAATTCCT CAGCCGTCCC GAATGGCGGG CGGTGCAGGC GCGCTACCAT
CCCACCTTCG CCGACCAGCG CTCCTACAGC CCGACCTTCA TGTACCGGGC GCTGGCGGAC
GGATCGGCCG ACGTGATCTC GGCCTTTTCG TCGGACGGGC GGATCGCGGC GATGGACCTG
GTGACGATCG CCGATCCGCG CGCCGCGCTG CCGCACTATG ACGCGGTGCT GCTGCTCTCG
CGCCGCGCCG CCGCCGATCC CGGGCTGGTG GCGGCGCTGC GCCCGCTGGT CGGCGCGATC
GATATCGGCC GGATGCGGAC GGCGAACGGG ATGGTCGACC GCGATATCGC CAAGCGCAGC
CCCGCGCAGG CCGCGCGCTG GCTGCTCGAC ACGAAAAGGA CGAGGGGCCC GTAA
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| Protein sequence | MIGGSTGWGE LAGLAQAHLL LSGCAVILAV AAGVPLAIVA AHGRRVRGPL LAVVGLMQTI
PGLALLALFY PLLLVLGRAS GLAIPALGFL PALLALCVYA LLPILRNGVA AIDGIDPALK
EAADGVGMTR RQKLWLVELP LGAPVILAGI RTAAVWTIGT ATLATTIGQP SLGDLIFSGL
QTEDWQRVLI GCFAAAALAL LVDAVLALVE SGLEARSRPR LIAGLAVLLL AVAAAFAPLP
RGDAARTGDV VVIGAKNFSE QYILAEAIEQ RLRAAGYRTA RRDNLGSAIA YRALAAGDIA
VYVDYSGTLW SNVLGRTDTP PPDVMLRRLE RDLAARDGVR LLGALGFENA YTFAMKRDRA
RALGIATLED LARAAPRLRL ASDLEFLSRP EWRAVQARYH PTFADQRSYS PTFMYRALAD
GSADVISAFS SDGRIAAMDL VTIADPRAAL PHYDAVLLLS RRAAADPGLV AALRPLVGAI
DIGRMRTANG MVDRDIAKRS PAQAARWLLD TKRTRGP
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