Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swit_0730 |
Symbol | |
ID | 5200212 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingomonas wittichii RW1 |
Kingdom | Bacteria |
Replicon accession | NC_009511 |
Strand | - |
Start bp | 808385 |
End bp | 810670 |
Gene Length | 2286 bp |
Protein Length | 761 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 640580274 |
Product | TonB-dependent receptor |
Protein accession | YP_001261235 |
Protein GI | 148553653 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | |
| 

|
Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 0.455478 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.0840976 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGATATCTA CAGCTTGGAC CAAGCGCCGC CTCCTGTCCT CGGCGATGAT CGCCGCCGCG CTGTGCGGGG TCAGCCAGGA AGCGCTCGCG CAGGGCGCCT CGACCGAAGG CGAGAATGAG CTGGAGGTGA TCACCGTCAC CGCCCGCCGC CAGACCGAGA ACCTCCAGAG CACGCCGATC TCGATCACCG CCTTCTCGGG CGACCGGCTC GAGGCGCAGG GCATCACCCA GGTCAACCGC ATCCAGGACT TCACGCCGAA CCTGACCTTC GCCAACATCC CGTCGAACAG CGGCATCGCG TCGAACGCGG CCGTCTACAT CCGCGGCATC GGACAGAACG ACTTCGCGCC GACCGTCGAG CCGGGCGTCG GCATCTATAT CGACGGCGTC TATCTGGGCC GCACCGCCGG CGGCGTGTTC GACCTGATCG ACGTCAACTC GGTCGAGGTA CTGCGCGGGC CGCAGGGCAC GCTGTTCGGC CGCAACACGA TCGGCGGCGC GATCAACCTG ACGACGGTCC AGCCGAGCGA CGAGTTCAAG CTGAAGGCCG ACATCAAATA CGGCACCGAC GACCGGATCA ACGTGCGCGG CATGGTCAGC GGCCCGATCG CCGAGGGCAT CTACGCCAAG GTCAGCGGCG GCCTCTTCTC GCAGGACGGC TATGTGAAGG CGCCGGGGCT CGGCAAGAAG CTGGGCAACC AGGACACCAA GATGATCCGC GGCGCGCTGC GCATCGCGCC GGTCGACAGC CGGTTCGAGG CGACGATCGC CGGCGACTAT ACCCGCGACA AGAGCAACGG CGCGCCGGTC ACCATCTCGG GCATCGATCC GACCGCGACC GGCAGCTTCG TGACGTTGCA GAACGTCATC GCGACCGGCC TGGGCAATCC GGCCGACTGC CTGACCCCGG CGGCTGCGGC CAACACCCAG TGCTACAACC AGCGCCTCTT CTCGAAGGAC ACCAACTATT CGACCGGGCC GACCTTCTCG GACCTCGAGC TGTGGTCGGC GTCGCTGACC GCCTCCTATG ACCTGACCGA CGAGATGCAG ATCAAGTCGA TCACCGCGAT CCGTCGCATC AACGGCACCT TCGCGCAGGA CCGCGACGGA TCGAACCTGC CGATCAACCA TGTCTATGAC GACTTCACCC AGAAGCAGTT CAGCCAGGAA TTCCAGTTCA CCGGCAAGGC GTTCGACGAC CGGCTCAACT GGGTCACCGG CCTCTATTTC TTCAAGGAGA AGGGCAAGGA CCTCAACTCG ATCGACTTCC TCGTCGTGTC GGCGGAATCG GGCGGCTATT ACGACTACAA GAACTGGGCC GCCTTCGCGC AGCTCGGCTA CAAGCTCACC GACAAGCTGA CCCTGACCGG CGGCCTGCGC TACACGCAGG ACCGCAAGGA CTATCTGCCC GACCAGTTCG TGAAGTCGAC GCTGGCGCCG TTCCTGGTGA TCCCGCCCGG CACCCGGATC GTGCCGCTCC AGACGGTCAA GGCCGACGTC AACAAATGGA CGCCGATGGT CAACCTGTCC TACCAGGCGA CGCGCGACTT CATGCTCTAT GCGACCTATT CGCAGGGCTT CAAGAGCGGT GGCTATACCC AGCGCATCTT CCCGCCCGAG CCGAGCCTGC CGAACTTCAA GCCCGAGACG GTCGACTCCT ACGAAGCCGG CTTCAAGCTG ATGGCGCTCG ACAACCGTCT GCGCCTGAAC GGCGCCGCCT TCTACACCGA TTACAAGGAC ATGCAGCTTC TGGTGGCGGA TGCGACCCGG GTCGGGCCGT TCATCACCAA CGCCGGCAAG GCGCGCATCC AGGGCTTCGA GCTGGAGACC AACTTCGCGC CCGGCGACGG CTGGCGCCTG AACGCGGCGG TCGGCCTGAC CGACGCCAAG TTCAAGCAGC TCGACGCCGG CGTCCAGGGC CTGACCCTCG ACTCCAAGTT CGTCTACGTC TCGAAATGGA CGGTCAGCGC GTCGGGCGAG AAGGAGATCG GCCTGGGCGA CAACGGCTCG CTCACGCCGC ATGTCGACTG GTCGTACCGG TCGGGCTTCT TCACCAACGC CAACGGCATC AACAACCCCG AACTCTACCA GCCGGGCTAC AGCGTCTTCA ACGGCAACGT CCGCTGGCAG AGCGACAGCA AGACCTTCTC GCTGACCTTC GGGGTCGACA ACATCGCCGA CAAGAAGTTC CGCACGTTCG GCGATTACCA GCCGTCCTTC GGCTTCTTCA TGCAGGCCTA TGATCGCGGC CGGCAATATT ATGTGAAGGC CGGCTTCTCC CTCTGA
|
Protein sequence | MISTAWTKRR LLSSAMIAAA LCGVSQEALA QGASTEGENE LEVITVTARR QTENLQSTPI SITAFSGDRL EAQGITQVNR IQDFTPNLTF ANIPSNSGIA SNAAVYIRGI GQNDFAPTVE PGVGIYIDGV YLGRTAGGVF DLIDVNSVEV LRGPQGTLFG RNTIGGAINL TTVQPSDEFK LKADIKYGTD DRINVRGMVS GPIAEGIYAK VSGGLFSQDG YVKAPGLGKK LGNQDTKMIR GALRIAPVDS RFEATIAGDY TRDKSNGAPV TISGIDPTAT GSFVTLQNVI ATGLGNPADC LTPAAAANTQ CYNQRLFSKD TNYSTGPTFS DLELWSASLT ASYDLTDEMQ IKSITAIRRI NGTFAQDRDG SNLPINHVYD DFTQKQFSQE FQFTGKAFDD RLNWVTGLYF FKEKGKDLNS IDFLVVSAES GGYYDYKNWA AFAQLGYKLT DKLTLTGGLR YTQDRKDYLP DQFVKSTLAP FLVIPPGTRI VPLQTVKADV NKWTPMVNLS YQATRDFMLY ATYSQGFKSG GYTQRIFPPE PSLPNFKPET VDSYEAGFKL MALDNRLRLN GAAFYTDYKD MQLLVADATR VGPFITNAGK ARIQGFELET NFAPGDGWRL NAAVGLTDAK FKQLDAGVQG LTLDSKFVYV SKWTVSASGE KEIGLGDNGS LTPHVDWSYR SGFFTNANGI NNPELYQPGY SVFNGNVRWQ SDSKTFSLTF GVDNIADKKF RTFGDYQPSF GFFMQAYDRG RQYYVKAGFS L
|
| |