Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swit_0725 |
Symbol | |
ID | 5198955 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingomonas wittichii RW1 |
Kingdom | Bacteria |
Replicon accession | NC_009511 |
Strand | - |
Start bp | 802131 |
End bp | 804503 |
Gene Length | 2373 bp |
Protein Length | 790 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 640580269 |
Product | TonB-dependent receptor |
Protein accession | YP_001261230 |
Protein GI | 148553648 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.0453465 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAAGGG GAATTGGGAT ATTGTCGGCT TCGGCCGCCA CGCTGGCCGT GTTCGCGCCG GGTGCCGGCC ATGCGCAGGA CGCGGCGGGG CCCGTCGTCG CCAGCGGCCT CGAGGAGATC ACCGTCACCG CCCGCCGGCG CGCGGAGAAT ATCCAGTCGG CGCCGCTCTC GGTCTCCGCG TTCAGCAGCG CCGCGCTCGA GGAGCGCAAC GTCCAGAGCT CGTCCGACAT CACCAGCTTC GTGCCGAACG TGCAGTTCGA CAGCGCGGCG AGCGAGTCCG GCGGCGGCGC GTCGAGCCAG ATCTCGATCC GCGGCATCGG CCAGACCGAC TATGTGCTGA CCGTCGAGCC GGCGGTCGGC GTCTATCTGG ACGGCGTCTA TATCGGCAAG TCGATGGGCT CGCTGCTCGA CGCGGTCGAC ATCGATCGGC TGGAGGTGCT GCGCGGCCCG CAGGGGACGC TGTTCGGCAA GAACACGATC GGCGGCGCGA TCCAGCTCAT CTCGAAGCGG CCGACCGACA CGCTCGAAGG CTATGGCGAG CTGACCAGCG GCAGCTACAG CCGCTTCGAC GCCAAGGGCG CGATCTCGGG CCCGCTCAGC GACACCGTCC GCGCGCGCCT GTCGGGCGCC TATCAGAGCC GCCACGGCTT CGTGAAGCGC GTCACCGAGA CCGGCCAGGA CACCGGCGAC CGGCAGGGCA ATGTCGACCG GCTGAGCGGC CGCCTCGCGA TCGAGGCCGA CCTGACCTCC AGCCTCACCG CGACGCTGAC CTTCGACGGC ACCCGCATCC GCGAGCAGTC GCCGGGCCAG ATACTGGTCA AGGCCGACGA AGGCGCGGCC TTCTCGGGCG CCTATAATGC CGGCGTGCCC GGCGGCGTCT GCCTGCCGGG GGCCGGCGCC AGCCGGTTCG CCAACCCCTA TTGCTACAAC AGCCAGTGGG TCCGCCCGCT CAAGTCGCTG GAGACCACCA ACAGCGGCCC CAACTATGCC GACACCGACG TCTATGGCGC GGGGCTGAAC CTCGAATGGA AGCTCGGCGG CGCGACGCTC AAGTCGATCA CCGCCTGGCG CAAGGTGAAG GTCGACATCG CGCAGGACAT CACCGGCTCG CCGCACTATC TCAACTTCAT CGAGCAGCAC ATCAAGACCG AGCAGTTCAG CCAGGAGTTC CAGCTCCTCG GCGATCTCGC CGACGACAAG CTGCACTATG TGCTCGGCCT CTATTACCTG CACGAGAGCG GCACCCAGCT CTTCCCGGTG CAGCTCACGC TCGTCCAGTT CCTGTCGGGC GGCAAGATCC GCAACGACAG CTATGCGGGC TTCGGCCAGG TCACCTATGA CCTGACCGAC CAGTTCTCGA TCACCGGCGG CCTGCGCTAT TCGGACGAGA CGCGGCGCTT CAATCCGGGC GTGCAGGTGC TCCAGGGCTA TGCCGCGCAG ACCGACGTGC CGGGCTTCGT CAACCTGTTC GCCGGCGCGG TCGGCCCGGC CGGCACGCCG CTCTTCCCGG CCGGCTGGTA TTCGCGCGGG TCGAAGTCGA CGACGCCGAT GGTCTCGGCC AACTACAAGT TCAACCGCGA CGTCATGGCC TATGCGAGCT TCTCGAAGGG CTTCAAGGGC GGCGGCTTCA CGATGCGCTA CTTCCCGCCC GTCATCCCGG CGCCGGGCAC CGACCCGAAC GACATCGTCT CCTATGCCGG CCCGGAAAAG GCGACCTCCT ACGAGGTCGG CCTGAAGACC GAGCTGTTCG ATCGCCGCCT GCGCTTCAAC GTCGCGGCCT TCTACACCGA CTACAAGGAC ATCCAGGTCA CCTACAACAT CGACCCGGAC GGCCCCGGCC CGATCGGCAA TTTCGTGCCG GTGCTCGCCA ACGCCGCCTC GGCGAAGATC AAGGGCGTCG AGGTCGAGGC GTCGGCCCGG CTCGCCGACT GGCTGCGGCT CGACGGCAGC CTCGGCTATA CCGATGCCGA CTATAAGGGC TTCTCGGCCC AGGCGCTGGC CAACTATCCG ACGGCGGGCA GCTTCCGGGT GCCGAACACG CCCAAATGGA CGGCGAACAT CGGCGGCACC GCGACGCTGT TCGACAGCGA CGACAAGGGC ACCGCGCTGG TCCGCGTCGA CTATGCGTAC CGCAGCAGCC AGTTCAAGGA GTTCAGCAAC GATCCGACGC TGTTCCAGAA GGGCTTCGGA CTGCTCAACG CCAGCCTGAC CTACAAGCTG CCGGGCGACC ATATCGAGCT GTCGGCCGGC GCCACCAACA TCACCGACAA GACCTATATC GTCAGCGGCG TCTCCAACAC CGGCATCGGC TATACCCAGG CGACCGTCTC GCGGCCGCGC GAATGGTTCG TCCGCGCCAA ATATCGCCTC TGA
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Protein sequence | MKRGIGILSA SAATLAVFAP GAGHAQDAAG PVVASGLEEI TVTARRRAEN IQSAPLSVSA FSSAALEERN VQSSSDITSF VPNVQFDSAA SESGGGASSQ ISIRGIGQTD YVLTVEPAVG VYLDGVYIGK SMGSLLDAVD IDRLEVLRGP QGTLFGKNTI GGAIQLISKR PTDTLEGYGE LTSGSYSRFD AKGAISGPLS DTVRARLSGA YQSRHGFVKR VTETGQDTGD RQGNVDRLSG RLAIEADLTS SLTATLTFDG TRIREQSPGQ ILVKADEGAA FSGAYNAGVP GGVCLPGAGA SRFANPYCYN SQWVRPLKSL ETTNSGPNYA DTDVYGAGLN LEWKLGGATL KSITAWRKVK VDIAQDITGS PHYLNFIEQH IKTEQFSQEF QLLGDLADDK LHYVLGLYYL HESGTQLFPV QLTLVQFLSG GKIRNDSYAG FGQVTYDLTD QFSITGGLRY SDETRRFNPG VQVLQGYAAQ TDVPGFVNLF AGAVGPAGTP LFPAGWYSRG SKSTTPMVSA NYKFNRDVMA YASFSKGFKG GGFTMRYFPP VIPAPGTDPN DIVSYAGPEK ATSYEVGLKT ELFDRRLRFN VAAFYTDYKD IQVTYNIDPD GPGPIGNFVP VLANAASAKI KGVEVEASAR LADWLRLDGS LGYTDADYKG FSAQALANYP TAGSFRVPNT PKWTANIGGT ATLFDSDDKG TALVRVDYAY RSSQFKEFSN DPTLFQKGFG LLNASLTYKL PGDHIELSAG ATNITDKTYI VSGVSNTGIG YTQATVSRPR EWFVRAKYRL
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