| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_0715 |
|---|
| Symbol | |
|---|
| ID | 5199477 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | + |
|---|
| Start bp | 789240 |
|---|
| End bp | 790934 |
|---|
| Gene Length | 1695 bp |
|---|
| Protein Length | 564 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 640580259 |
|---|
| Product | amidohydrolase 3 |
|---|
| Protein accession | YP_001261220 |
|---|
| Protein GI | 148553638 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1574] Predicted metal-dependent hydrolase with the TIM-barrel fold |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 0.993176 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 3 |
|---|
| Fosmid unclonability p-value | 0.000630389 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGAAGACGG CACGTCATAA AGCAACCCTG ATCATCGCCG CCCTCCTTTC GGCATCGGCG
CTCCAGGCCG CGGACCGCAC CGCCGACCTG ATCCTGACCA ATGGCGAGGT CTATACGCCG
CAGGGCTGGG CCGCCGGCGT CGCCGTCAAG GACGGCGCGA TCCTGGCGGT CGGCGACGCG
GCCGCGCTCG GCGCCTATCG CGCGCCCTCC ACGAAGATGG TCGACCTCGG CGGCAAGACC
GTGATGCCCG GCCTTTACGA CATGCACGTC CACCCGCTCG GGGCCGGGCT GGCGATGTCC
GAATGCCGCT TCGAATATGG CGCGGCGCCC CAGCATATCC TCGACGCCGT CACGGCCTGC
GTGAAGGCGG CGAAGCCCGG CGAGTGGATC ACCGGCGGCC GCTGGCAGGC CGTCTCCTTC
GGCGACACCC CGCCGACCCG CGAGATGCTC GACCGGGTCG CCCCGAACAA TCCGGTGGCG
CTGACCGACA TCAGCGGACA CAGCATGTGG ACCAACAGCC TGGCGCTCAA GTTGGCCGGC
ATCACCCGCG ACACGCCCGA TCCGGAAGGC GGCATCATCG AGCGCGACGC GCGGGGCGAG
GCGACCGGCC TGCTCCGCGA GAGCGGACGC GACCGGGTGA AACGGGCGAT CCCGGCCCCT
TCGCTCGAGA AGAACGTCAA GGCGCTCGAC ACCGCGCTCG ACACCATGTT GTCGCACGGC
GTGACCGGGC TGGTCGACGC CCGGGTGCCG CGCGCCGGCC TGGAAACCTA TGCCGCCCTC
GCCGACCGGG GCCTGCTGAA GCAGCGCGTG GTCGGGTGCC TCCACTATAG CGGCGACAAG
GAATTCGAGG ATATCCTCCG CAACCGCCGC AGCTATGAGC GCGCGCGCTT CCGGACCGAC
TGCGTCAAGA TGTACGAGGA CGGCGTCCCG ACCGAGAGCC ACACCGCGGC GATGATCGAT
CCGTACGCGC CCGGCGCGGA CGGCCATCTC CACGAGCCGG CGCGCGGGCT GCTGCTCGTC
GGGCCGGCGA CGCTCGATCC GCTGGTCACC CGCCTCGACA AGATGGGGAT CACGGTCAAG
TTCCACGCCG CCGGCGACCA GGCCTCGCGC ACCGCGCTCG ACGCCATCGC CGCGGCGCGC
AAGGCCAACG GCCCGAACGG GCCGATGCAC GAGGTCGGCC ACCTGACCTT CGTCAAGCCG
GACGATCTGG CGCGCGCGAA GACCATCCGG GCGACGCTCG AATTCTCGCC CTATCTGTGG
TTCCCGTCGG CGATCAACGA CGACATCATC AAGGCCATCG GGCCGGACCG GATCAAGCGC
GTCTGGCCGG TGCGCGAGGG GCTGGATTCG GGGGCGCTGG TCATCGCCGG GTCGGACTGG
TCGGTGGTTC CCTCGGCCAA TCCCTGGATC GGCATCGAGA CGCTGGTCAC CCGGCGCGCG
CCCGACGACC AGCGCCCCGG CGAGGTCTAC GGCCCGGCCG AGGCGATCAC CCTCAAGGAA
GCGATCGACA TCTTCACGAT CAACGCCGCC AGACAGCTCG GCATGGCCGA CAAGCTGGGG
ACGATCGAAC CGGGCAAGAT CGCCGACCTG ATCATCCTCG ACCGCAATCC GTTCAAGATT
CCGGCGACCG ACGTCCACAA CGTCGTCGTC ACCCAGGTGA TCATCGACGG AAAGACCGCC
TACCAGCATC CGTGA
|
|---|
| Protein sequence | MKTARHKATL IIAALLSASA LQAADRTADL ILTNGEVYTP QGWAAGVAVK DGAILAVGDA
AALGAYRAPS TKMVDLGGKT VMPGLYDMHV HPLGAGLAMS ECRFEYGAAP QHILDAVTAC
VKAAKPGEWI TGGRWQAVSF GDTPPTREML DRVAPNNPVA LTDISGHSMW TNSLALKLAG
ITRDTPDPEG GIIERDARGE ATGLLRESGR DRVKRAIPAP SLEKNVKALD TALDTMLSHG
VTGLVDARVP RAGLETYAAL ADRGLLKQRV VGCLHYSGDK EFEDILRNRR SYERARFRTD
CVKMYEDGVP TESHTAAMID PYAPGADGHL HEPARGLLLV GPATLDPLVT RLDKMGITVK
FHAAGDQASR TALDAIAAAR KANGPNGPMH EVGHLTFVKP DDLARAKTIR ATLEFSPYLW
FPSAINDDII KAIGPDRIKR VWPVREGLDS GALVIAGSDW SVVPSANPWI GIETLVTRRA
PDDQRPGEVY GPAEAITLKE AIDIFTINAA RQLGMADKLG TIEPGKIADL IILDRNPFKI
PATDVHNVVV TQVIIDGKTA YQHP
|
|---|
| |