Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swit_0706 |
Symbol | |
ID | 5198179 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingomonas wittichii RW1 |
Kingdom | Bacteria |
Replicon accession | NC_009511 |
Strand | - |
Start bp | 773858 |
End bp | 776236 |
Gene Length | 2379 bp |
Protein Length | 792 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 640580250 |
Product | TonB-dependent receptor |
Protein accession | YP_001261211 |
Protein GI | 148553629 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 5 |
Fosmid unclonability p-value | 0.00993483 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGGATGCGA GACGCATGAA GCGCGCTTTC CTTGCCACGG CCTCGGCCCT GCTGGTCCTG CCCGCGGTAC CGGCGCTGGC GCAGGCCGCC GAGCAGGATG CCGGCTATAA TCCGGCGTCG CTGGGCGACA TCGTCGTGAC CGCCCGCAAG CGCGAGGAGT CGGTGCAGAC CACGCCGCTG TCGATCTCCG CCTTCGGCGC GCAGGCGTTG CAGGACCGCA ACGTGCAGTC GTCGGCCGAC ATCGCCAATT TCGTGCCGAA CGTGCAGTTC GACAGCGCGG CGAGCGAGTC CGGCGGCGGC GCGTCGAGCC AGATCTCGAT CCGCGGCATC GGCCAGACCG ATTATGTCAT CACCGTCGAG CCGGCGGTCG GCCTCTATCT GGACGGCGTC TATGTCGGCA AGTCGGTCGG CTCGCTGCTC GACACCGTCG ACATCGAGCG GATCGAGGTG CTGCGCGGGC CGCAGGGCAC GCTGTTCGGC AAGAACACGA TCGGCGGCGC GATCCAGTTC ATCTCCAAGC GGCCGAGCGA CAAATTCGAG GCCGAGGCGG AGGCGACGGT CGGCCGCTTC AACCGGGTCG ACGTGAAGGG CATCTTGTCC GGGCCGCTGT CGGACCGGGT CCGCGCGCGC CTGTCGGGCG CCTATCAGAG CCGCGACGGC TTCATGGACC GGGTCAGCCC CACCGGCGCC AAGACCGGCG AGCAGGGCAA CATCAACCGG CTGAGCGGCC GGCTGGTGCT CGAGGCCGAC CTGACCGACA ACCTGCTCGC CACCCTGTCG TTCGACGGCA CCCGCATCCG CGAGCAGTCG CCGGCCCAGG TGCTGCTCAA GGTGGTCGAG ACCGACGGCT TCGCCGGCAT CTACAACGGC GCGGTGCCGG GTGGGGTCTG CCTGCCGACG GCGGGGCCGT CGCGGTTCGG CAATCCCTAT TGCTACAATA GCCAATATGT CCGGCCGATC GACGGCCGCA CGACCACCAA TTCGGGGCCG AACCAGTCCG ACACCGACAT CAAGGGCGCG TCGCTGAACC TCGAATGGAA GGGCGACGGC ATCACCCTGA AGTCGATCAC CGCCTATCGC GACGTCGGCG TCGACGTCGC GCAGGACCTC TACGGGTCGC CCTATTATTA CGGCGGGGTC GAGCAGCACA TCTCGCAGAA GCAGTTCAGC CAGGAGGTGC AGCTGCTGGG CGACCTGATG GACTCGCGGC TGCAATATGT CGCCGGCCTG TTCTACATGC ACGAGAGCGG CACGCAGGTC TTCCCGGTCA ACCTGCCGCT GGTGCAGTTC GATTCGGGCG GCAAGATCAA GAATGACAGC TATGCCGCCT TCGGCCAGAT CACCTACGAC CTGACCGACC AGTTCTCGAT CACCGGCGGC CTGCGCTACA CTTACGAGCG CAAGCAGTTC AATCCGGGGC TGCAGGTGAT CACCGGCTAC GACTATCTGT CGACCATCCC GACGCCGGGC GTGACCAATC CGATCGTCGA CCTGTTCGGC CCGGTCGGCA CGCCGCTGTT CCCGGCGGGC TGGTACAAGC GGACCAGCAA GTCGGCGACG CCGATGGTGT CGCTCAGCTA CAAGTTCGAC CGCGGCACCA TGGCCTATGC GACCTTCTCG CAGGGGTTCA AGGCGGGCGG CTTCACGATG CGCTACTTCC CGCCGGTCAT TCCCGCGCCC GGCACCGATC CCGACGACAT CGTCTCCTAT GCCGGCCCGG AGAAGGCGAC CTCCTATGAG ATCGGCCTCA AGACCGAGCT GTTCGACCGC CGCCTGCGCC TCAACGTCGC GGGCTTCTAC ACCGACTACA AGAACATCCA GGTCACCTAT GTGGTCGACC CGGACGGCCC CGGCCCGATC GGCCAGTTCG TGCCGGTGCT CGCCAATTCG GGCACCGCGC ACATCAAGGG GATCGAGGTC GAGGGATCGG CGGTGCTGGC CGACTGGTTC CGCTTCGACG GCAGCTTCGG CTATATCGAC GCCAAATATG TGAAGTTCAG CGCCGACGCG CTGGCCAACT TCCCCGGCGC GCTGTCGCTG AAGATCCCGA ACACGTCGAA GTTCACCTAT AATGTCGGCG GCGTCGCGAC CTTCTTCAAC AACGACCATG GCACGTTGTT CGCGCGCGCC GACTACAGCC GCCGCAGCGG CCAGTACAAG GAGTTCTCGA ACGATCCGTC GCTCTTCCAG CCGGCCTATG GCGTGCTCGG CGCGTCGGTG ACCTATCGTT CGCCGACCAA GCGCTGGGAA GTGGCGGCCG GCGGCACCAA CCTGACCAAC AAGGCCTATA TCGTCAGCGG CGTCACCAGC TCCGAATATT CCCAGGCAGT CCGGTCGCGC CCGCGCGAAT GGTTCTTGCG TCTGCGCTAC CAGTATTGA
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Protein sequence | MDARRMKRAF LATASALLVL PAVPALAQAA EQDAGYNPAS LGDIVVTARK REESVQTTPL SISAFGAQAL QDRNVQSSAD IANFVPNVQF DSAASESGGG ASSQISIRGI GQTDYVITVE PAVGLYLDGV YVGKSVGSLL DTVDIERIEV LRGPQGTLFG KNTIGGAIQF ISKRPSDKFE AEAEATVGRF NRVDVKGILS GPLSDRVRAR LSGAYQSRDG FMDRVSPTGA KTGEQGNINR LSGRLVLEAD LTDNLLATLS FDGTRIREQS PAQVLLKVVE TDGFAGIYNG AVPGGVCLPT AGPSRFGNPY CYNSQYVRPI DGRTTTNSGP NQSDTDIKGA SLNLEWKGDG ITLKSITAYR DVGVDVAQDL YGSPYYYGGV EQHISQKQFS QEVQLLGDLM DSRLQYVAGL FYMHESGTQV FPVNLPLVQF DSGGKIKNDS YAAFGQITYD LTDQFSITGG LRYTYERKQF NPGLQVITGY DYLSTIPTPG VTNPIVDLFG PVGTPLFPAG WYKRTSKSAT PMVSLSYKFD RGTMAYATFS QGFKAGGFTM RYFPPVIPAP GTDPDDIVSY AGPEKATSYE IGLKTELFDR RLRLNVAGFY TDYKNIQVTY VVDPDGPGPI GQFVPVLANS GTAHIKGIEV EGSAVLADWF RFDGSFGYID AKYVKFSADA LANFPGALSL KIPNTSKFTY NVGGVATFFN NDHGTLFARA DYSRRSGQYK EFSNDPSLFQ PAYGVLGASV TYRSPTKRWE VAAGGTNLTN KAYIVSGVTS SEYSQAVRSR PREWFLRLRY QY
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