Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swit_0680 |
Symbol | |
ID | 5196123 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingomonas wittichii RW1 |
Kingdom | Bacteria |
Replicon accession | NC_009511 |
Strand | + |
Start bp | 741947 |
End bp | 744208 |
Gene Length | 2262 bp |
Protein Length | 753 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 640580224 |
Product | TonB-dependent receptor |
Protein accession | YP_001261185 |
Protein GI | 148553603 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | |
| 

|
Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 0.915685 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 0.983563 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCGACATC TTGCAGGGGC AAACACATCG TTCAGGGCAT GTCTGCTGGC GGGGATCGGG CTGTCGATCG CCGTCCCGGC GGCGGCGCAA TCGCCCGCCG CGGAGACCGG CGACATCATC GTGACCGCGC TCAAGCGCGA CACCACGCTG CAGGACACGC CGATCGCGAT CTCGGCGGTG ACCGGGGAGA CGCTCACCAA GTCGGGCGTC AGGGACATAG GCGCGCTCAA CGCGCCCAGC CTCAACTTCG TCGATGGCGG CCCCTCCTCC CGGCGCGTCG TCATCCGCGG CATCCAGGCC GCGGGCGAAC CGACGGTCGG CGTCTATTAT GACGAGACGC CGGTGACCGG CGCGCTCGGC GCGGGCAACG ACGCCGGGTC GAACACGCCC GAACTGCGCC TGTTCGACGT CGAGCGGGTC GAGGTGCTGC GCGGCCCGCA GGGGACGCTC TACGGCTCCG GGTCGATGGG CGGCACCCTG CGCATCATCT ACAACAAGCC GGTGTTCGAG ACCCGGATGG CGGCCGACGT CAGCCTTTCG GGGACCGAGG ACGGCGGCTT CAACTATCTC GGCAACGCGA TGGTCAACGT TCCGCTGATG CAGGACGTGA TGGCGCTGCG CGTGACCGGC TTCTACGGCC GCGACGCCGG CTATATCGAC AATGTCGCGC TGGGCATCGA CAACATCAAC AAGACCAAGG TCTATGGCGG CCGCGCGCAG CTTCGCATCG TGCCGACCTC GGCGCTGAAG CTCGACCTCG CCGCCTTCGT CAACCGGTCG CGCACCGACA CGCCCTCCTG GGCGCTGGAG GCGGGCCGCT ACAAGACCGA CAGCCTGACC CGCCAGCCGC GCCGCGACGA TTTCGAACTC TACAGCGGCA CCGCCAACTG GGATCTCGGC GGCGTGGTGG CGACGGGCGT GCTGTCCTAC GCGCATCTGC GCTCGGTCGC CGCCAACGAC GTGTCGCGCT ACCTGGCGGG CAACCGCAGC CCCGGCGCCT GCGCGGCGCT GGTCAACGCC AACACCCCGT GCGGCGCCGA CAAGCTCGCC GACTTCTACG CACTGGTCGA CGATCAGGTG CCGAGCGCGC TCGATCCCGA CCAGACGGTC AAAACGCTGA CGACGGAATT GCGGCTCAGC TCGGACGGCA AGGGGCCGCT CAACTGGACG GTCGGCGGCT TCTATTCGCG GCGGCACAGC CTGCTCGCCA ACCGCCACCT CCATGCCGAT CCGGTGACGG GCGAGCTGCA GCCCGGCCGG CCGCTGCTGG TGCTGCGCAA CGTCGACGAC CTGCTGAAGC AGGTGGCGGC GTTCGGCGAA CTGTCCTGGG ACCTCACCGA TCGCCTCAAC CTGACGGCGG GCATCCGCTA CTTCAAATAT GACAAGGTCG TCTCGGGCGA GACCCCGATC GGCAACGTGC TGGTGCGGTC GGCGGTGCTG CCGCTCACCA CCGTCACGTC GAGCGAGGAC GGCACGACGC TGAAGTTCAA CGCCTCCTAC AAGATCACCC GCGACGTCAT GGTCTATGCG GGGGCGGCGC AAGGTTTCCG GCCGGGCGGC CTCAACCAGG TGATCGGGCT CGATCCGTCG CTGGCGCCCT ATCGCTCGGA CAATGTCTGG AATTACGAGC TGGGCATCAA GAGCACCTTG TTCGACCGGC GGCTGACCCT CAACGCCGAC GTCTTCCAGA TCGACTGGAG CGACATCCAG ATCACCGGCA CCACCCCCAA CGGCGCCTTC CGCTTCATCA CCAATGCGGG TTCGGCGCGG GTCAAGGGGA TCGAGGCCGA AGCGTCGCTG CGGCCGGTCG ACGGCCTGCT GCTCGAAGCC AACGGCTCCT ATATCGACGC CAAGCTGACG ACCGACCAGA AGACGGCGAC CGTCTCCGCG CCGGGCAAGG CCGGGGACCG CATCCCCTAT GTGCCGAAGC TCACCGGATC GGTCGCGGCC GAATATCGCT GGGCGGTCGG CGGCGATCTC GGCGCGATGG TGCGGATCGA CCTGCGCCAT GTCGGCAGCT CGTTCTCCGA CTTCCGGCCC ACCGGCACCT TCACCCGCCG CCTCGGCGCC TATGAGCTGG TCAACGCCCG GATCGGCCTG CAGGCCGAGG ACGGCCGGTG GGGCGCCTAT CTGTTCGCCA CCAACCTGTT CGACAAGGTG GCGGTGACCC GATCGACCGC CAGCGCGCTG ACCGGCGGAC GGACCTTCGT CAACACCGTC GCGCCGCGCA CCATCGGCAT CAACCTGCGG ACCGATTTCT GA
|
Protein sequence | MRHLAGANTS FRACLLAGIG LSIAVPAAAQ SPAAETGDII VTALKRDTTL QDTPIAISAV TGETLTKSGV RDIGALNAPS LNFVDGGPSS RRVVIRGIQA AGEPTVGVYY DETPVTGALG AGNDAGSNTP ELRLFDVERV EVLRGPQGTL YGSGSMGGTL RIIYNKPVFE TRMAADVSLS GTEDGGFNYL GNAMVNVPLM QDVMALRVTG FYGRDAGYID NVALGIDNIN KTKVYGGRAQ LRIVPTSALK LDLAAFVNRS RTDTPSWALE AGRYKTDSLT RQPRRDDFEL YSGTANWDLG GVVATGVLSY AHLRSVAAND VSRYLAGNRS PGACAALVNA NTPCGADKLA DFYALVDDQV PSALDPDQTV KTLTTELRLS SDGKGPLNWT VGGFYSRRHS LLANRHLHAD PVTGELQPGR PLLVLRNVDD LLKQVAAFGE LSWDLTDRLN LTAGIRYFKY DKVVSGETPI GNVLVRSAVL PLTTVTSSED GTTLKFNASY KITRDVMVYA GAAQGFRPGG LNQVIGLDPS LAPYRSDNVW NYELGIKSTL FDRRLTLNAD VFQIDWSDIQ ITGTTPNGAF RFITNAGSAR VKGIEAEASL RPVDGLLLEA NGSYIDAKLT TDQKTATVSA PGKAGDRIPY VPKLTGSVAA EYRWAVGGDL GAMVRIDLRH VGSSFSDFRP TGTFTRRLGA YELVNARIGL QAEDGRWGAY LFATNLFDKV AVTRSTASAL TGGRTFVNTV APRTIGINLR TDF
|
| |