Gene Swit_0673 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwit_0673 
Symbol 
ID5196247 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSphingomonas wittichii RW1 
KingdomBacteria 
Replicon accessionNC_009511 
Strand
Start bp731766 
End bp734051 
Gene Length2286 bp 
Protein Length761 aa 
Translation table11 
GC content64% 
IMG OID640580217 
ProductTonB-dependent receptor 
Protein accessionYP_001261178 
Protein GI148553596 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG1629] Outer membrane receptor proteins, mostly Fe transport 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATGCGGG GACAAGGGGG ATACGGGGCG GCTCGACGGG CGCAGGCCGG CTATCGGGCG 
ATCGCCATCG CCACGCTCGG CATGGCGGCT GGCCTGTCGG CGGCGCCGGT CGCGGCACAG
AGCAGCGGTG ACGATGCGCA GTTGTCCGAG ATCGTGGTGA CCGCCGAGCG CCGCGAAACG
CGGCTGCAGG CGACGCCGAT CGCGGTGACC GCATTGTCCG GGGCGGCGAT GGCCGAGCGC
GGCGCGACCA CGGTCAGCGA CCTGGCCGGC ACCATCCCCA ACTTCACGGG TCAGGCCAGT
CCCGCAGGTG GCGATTCCAG CGGCCAATAT TTCATCCGCG GCGTCGGGCA GTTCGACTTC
ATCGTTACGC AGGAGCCCAG CGTGGGTCTC TATCTCGATG GCGTCTATGT CGGTCGCACA
GCGGGCGCCG CGCTCGATCT GGTCAATATC GAACGGGTCG AGGTGCTTCG CGGGCCGCAG
GGAACGCTGT TCGGCCGGAA CACCACCGGC GGCGCGATCC AGGTGGTGAC GCAAAAGCCC
GCCCGTGAAT TCGGTGGCTC GGCGGAGGTC ACCTTCGGCA GCCGCAAGCG GCTCGACATC
CGCGCCAGCA TCAATGCACC GCTGATCGAG GACCGGCTGT TCGCCAATGT CGCGGTCGCT
TCCTTCGATC AGGAAGGATA TGGCCGCCGG CTCACCACCG GCGAGAAGGT CGGCGAGCGC
GACAATATCG CCGGTCGCGC GCAGCTCTTC TACGACGGCG ACGATGTCGA CATCCGTTTC
GCGGTCGATG GTTCGAAGCG CGATGTCGGG CCGGGCCAGG AATCGCTGAT CCTGGTCGAT
CTCGCCAATC CCGCGTCGGC GGGTGTGGTC GCCTATAACG CGTCGTTGCA GGCGATGGGC
TTTGCCCCGA TCGGCACGAA CTTCATCCCG AAGGATCCGC TCGACACTTA TTCGGCCTAT
CCGGCCAAGG ACAATTACGA GATCTATGGC GGCAATCTGA CGGTCGACTG GTCGATCGGC
CCCGATCTCT CGCTCAAGTC GATCAGCGCC TATCGCAACC TGAAGGCTCA GGCGTCGCGC
GACTTCGACA GCACGCCTTA TCCGCTGATT CAACAGGCGA TCGACGACGA TCAGTCGCAG
ATCAGCCAGG AGCTGCAATT GGCCGGCAAG GCGTTCGACC AGCGGCTGCA ATATGTCGCC
GGCCTCTTCT ATTATCGCGA GCGTGCAAGG CAGTCGCAGT TCGCCGATCT GTTCGTGCCG
ATCGTGCGGA CGGGGCCGGG CGCCTATGAT TTCGCGCCAA CTGCCGGCGG CACGGCGCTG
CGCGTCTTCA ACAACCAGAC CACCAAGAGC TATGCCGCCT TCGCCCAGCT CGATTATCGG
CTGACCGACA GCTTCTCGCT CACGGCGGGC CTACGCTACA GCCGCGACGA AAAGGACCTG
ATCAGCTCGT TCGGGGTCGG CGTGTTCGGC AATGTGCGAC CACCCGCGAA GGTGACGGAC
AGCTGGTCGA ACCTCTCCCC GAAGGTCGGC GTGCAATATA AGCCGAACGA CGACGTCATG
CTGTACGCGT CGCTCTCGCG CGGCTTCCGC AGCGGTGGTT TCAACGGCCG TTCGTTCGTC
CCCGCGCCGC CGACCAGCTT CGGCAACGAG ACGATCTGGG CCTATGAGGC CGGCCTGAAG
TCCGAATGGC TGGATCGTCG CCTGCGCTTC AACATCGCCG GCTTCTATTA CGACTATAAG
GATTATCAGG GATCGACCCT CGACAATCTC GCGGTCGTGG TCGGCAACAT CGCCAATGTC
GCGCTGTCGG GGTTCGAGAT CGAGAGCGCC GCGCTGCTCT TCCCCGGTTT CCGGCTCGAA
GCCAATCTTG GCTATCTCCA CCAGAACATC AAAAAGGTCG ATCCCAATGC GGCGGTGTCG
ATCGCACCCT TTACCAAATT GGTGAACTCG CCGAAATGGT CGGGCTCGCT GGGCGCGCAA
TATGAGGCCG ATCTGGGCGG CAAGGGCACG CTCACCGTGC GCGGCGATGC CAGTTATCGC
AGCACCATCT GGTTCTTCCT GCCGAATAGC CCGGGTGAGA ACCAGAAGAG CTATTGGCTC
TACAATGGCC GGATCGGCTA TCGCGAGCCG GGCGATAAAT GGGAAATCCA GTTCTACGGG
CTCAACCTGG CCAACAAGCG CTACAAGGTG TTCGCCGAGA ACGAGGTCGG TTTCGGCACC
GCCGTCACCT TTGCCCAATA TGGCCGCCCG CGCGAGTTCG GCCTGACCGT GAAGGCGCGC
CTCTGA
 
Protein sequence
MMRGQGGYGA ARRAQAGYRA IAIATLGMAA GLSAAPVAAQ SSGDDAQLSE IVVTAERRET 
RLQATPIAVT ALSGAAMAER GATTVSDLAG TIPNFTGQAS PAGGDSSGQY FIRGVGQFDF
IVTQEPSVGL YLDGVYVGRT AGAALDLVNI ERVEVLRGPQ GTLFGRNTTG GAIQVVTQKP
AREFGGSAEV TFGSRKRLDI RASINAPLIE DRLFANVAVA SFDQEGYGRR LTTGEKVGER
DNIAGRAQLF YDGDDVDIRF AVDGSKRDVG PGQESLILVD LANPASAGVV AYNASLQAMG
FAPIGTNFIP KDPLDTYSAY PAKDNYEIYG GNLTVDWSIG PDLSLKSISA YRNLKAQASR
DFDSTPYPLI QQAIDDDQSQ ISQELQLAGK AFDQRLQYVA GLFYYRERAR QSQFADLFVP
IVRTGPGAYD FAPTAGGTAL RVFNNQTTKS YAAFAQLDYR LTDSFSLTAG LRYSRDEKDL
ISSFGVGVFG NVRPPAKVTD SWSNLSPKVG VQYKPNDDVM LYASLSRGFR SGGFNGRSFV
PAPPTSFGNE TIWAYEAGLK SEWLDRRLRF NIAGFYYDYK DYQGSTLDNL AVVVGNIANV
ALSGFEIESA ALLFPGFRLE ANLGYLHQNI KKVDPNAAVS IAPFTKLVNS PKWSGSLGAQ
YEADLGGKGT LTVRGDASYR STIWFFLPNS PGENQKSYWL YNGRIGYREP GDKWEIQFYG
LNLANKRYKV FAENEVGFGT AVTFAQYGRP REFGLTVKAR L