| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_0643 |
|---|
| Symbol | |
|---|
| ID | 5196905 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | - |
|---|
| Start bp | 696694 |
|---|
| End bp | 697692 |
|---|
| Gene Length | 999 bp |
|---|
| Protein Length | 332 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 640580187 |
|---|
| Product | mandelate racemase/muconate lactonizing protein |
|---|
| Protein accession | YP_001261149 |
|---|
| Protein GI | 148553567 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[R] General function prediction only |
|---|
| COG ID | [COG4948] L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 0.134382 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGACGG CCGAGGGACG GCGGCTCGTC GCGCGGATCG AGACCTGGCC GGTGGCCGGC
AGCTTCGTGA TCGCGCGCGG CGCGAAGACG CGGGTCGACG TGGTCGTGGT CGAGATATCC
GAGGCCGGCC ATCGCGGCCG GGGCGAGGCC ACCGCGATCT ATTATCATGG CGAGAGCGCC
GAAAGCGTGC GGGCGCAGGC CGAGGCGATG GCGGACGCGA TCGCCGAGGG CATCGGCCGC
GACGATCTGC TGCGCGCGAT GCCGCGCGGG GCCGCGCGCA ACGCGATCGA TGCCGCGCTG
TGGGACCTGG ACGCGAAGCG GACGGGCCGC CCGGCCTGGT CGCTGGCGGG GGTGGCGGAG
CCGATGCCGG TGCAGTCGGC CTTCACCATC TCGCTCGGCG AGCCAGATCG GATGGAGGCC
GACGCGCGCG CGGCCGCGCT GGTCTATCCG CTGCTCAAGC TCAAGCTGGC GGGGGAGGGC
GACATCGACC GCGTCGCGGC GGTCCGCCGG GGCGCTCCCG AGGCACGGTT GATCGTCGAC
GCCAATGAAG GCTGGACGGG GCGCGACGTG GTCGCCGAGG CGGCGGCGCT GCTGCCCTAT
GGCGTCGAGC TGATCGAGCA GCCGGTCCGG GCCGGCGAGG ACCGTCTCCT CGACGGCCTG
CGCTCGCCGA TCCCGCTCTG CGCCGACGAA AGCTGCCAGG ACCGCGCCGA TCTCGCGCGC
TGCGCCGGGC GCTACCAGGC GATCAACATC AAGCTCGACA AGGCGGGCGG GCTGACCGAG
GCGCTCGCGC TGGCCGCCGA GGCGCGGTCG ATGGGGCTGG AGCTGATGGT CGGCTGCATG
CTGTCGACCT CGCTCGGCAT CGCGCCCGCG ATCCTCGCCG CGCAGCAGGC CCGCTGGGTC
GACATCGACG GCCCGCTGCT CCTCGCCGCC GACCGCGACG ATCCGGTCCG CTTCGATCGC
GGGGTGGCCT ATCCGGCCCG GCCCAGCCTC TGGGGCTGA
|
|---|
| Protein sequence | MSTAEGRRLV ARIETWPVAG SFVIARGAKT RVDVVVVEIS EAGHRGRGEA TAIYYHGESA
ESVRAQAEAM ADAIAEGIGR DDLLRAMPRG AARNAIDAAL WDLDAKRTGR PAWSLAGVAE
PMPVQSAFTI SLGEPDRMEA DARAAALVYP LLKLKLAGEG DIDRVAAVRR GAPEARLIVD
ANEGWTGRDV VAEAAALLPY GVELIEQPVR AGEDRLLDGL RSPIPLCADE SCQDRADLAR
CAGRYQAINI KLDKAGGLTE ALALAAEARS MGLELMVGCM LSTSLGIAPA ILAAQQARWV
DIDGPLLLAA DRDDPVRFDR GVAYPARPSL WG
|
|---|
| |