| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_0627 |
|---|
| Symbol | |
|---|
| ID | 5197963 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | + |
|---|
| Start bp | 679644 |
|---|
| End bp | 681464 |
|---|
| Gene Length | 1821 bp |
|---|
| Protein Length | 606 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 640580171 |
|---|
| Product | peptidase M10, serralysin-like protein |
|---|
| Protein accession | YP_001261133 |
|---|
| Protein GI | 148553551 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG2931] RTX toxins and related Ca2+-binding proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCATCGA TCAGTTCGCT TCAGCAGACC GAAGTCACCT TCCTGTCCGG GATCAATGCC
AGCGGCATTC TCGCCGGCGA AAGCTACTGG ACCTGGAACG TCGACAACCC CGCCACCTAC
AATCCGGCGG ACAACTACAC CGCCAAATTC GGCGCCGGCA CGGCCGGCAC CGGCGCCACG
ATCAGCTATG CCTTCGACAT CGCATCGAAT TGGAGCGCGG TCGAGCAATC GGCCTTCGCG
TCGGCGGCCG CGCTCTGGTC GGCCGTGGCC GACGTCACCT TCGTCCAGGC CAGCCCCGGC
ACCGCCGAGG TGATCCTGCG GCGCGGGAGC GACGGCCACG CCTCGGGCGG CCAGAACACG
TTCTTCCCGG GCAGCACCGG AACGACGACG ATCGGCCGCG CGCGGGACGG CGCGATCGAG
ATCGACACCA GCGCGGCGGG TTTCGGGCCG ATCGGCTCGA CGTTCAGCGA ATATGGCGGC
TATCCTTATA CGACGCTGGT TCACGAATGG GGCCATGTGT TGGGCCTCGG CCATGGCGGC
GCCTATGACG AGAGCCTCGA CTTCGGCTCG CCGCGCTACA CCAGCTTCGA CTCGCGGGCC
TGGACGCTGA TGTCCTACAA CGATCCCGAC AGCGGCTTTT CCTGGGGCAC GTCGCGCGCC
AGCGACGGGT TGCTCTATCG CAACACGCCG GTCACGCCGA TGCCGCTCGA CATCGTCGCG
ATCCAGCGGA TCTACGGGGT CGCCGTCGAT ACGCCGCTGT CGGGCGGGCA GGTCTACGGC
TTCAACAGCA ACATCGCCGG CCCGATCGCC AAATATTTCG ACTTCACCCA GAACAGCCGG
CCGATCGTCA CGCTGTGGAA CAAGGGGGTC GGCAACACGC TCGACGTGTC GGGCTTCACC
AGCCCCTCGA CGATCGACCT GCACGACGGC GCGTTCAGCA GCGTCACCGG CCTGAAGAAC
GACATCGCGA TCGCCTATGG CACCCGGATC GACAGCGCGA TCACCGGCCC CGGCAACGAC
ACGATCGTCG GCAACGACAA CAGCAACGTC ATCATGGCCG GCGCGGGCAA CGACTCCATC
ACCGGCGGCA GCGGCAACGA CCATCTCTAC GGCGCCGCCT CCCGCGCGGT GCAGGGCGAC
GGTTCGGACA CGATCACCGG CGGCGCCGGC AACGACTATC TCCAGGGCAA TGCCGGCGAC
GACCGGCTCG ACGGCGGCAC CGGATCGGAC CGGATCCAGG GCGGCCAGGG CAATGACAGC
ATCGTCGGCA ATAGCGGCAA CGACAGTGTC AACGGCAATC TGGGCAGCGA TACGATCGAC
GGCGGCGAAG GCAATGATTC GCTGCGCGGC GGCCAGGGCG GCGACAGCAT CCAGGGCGGC
GCCGGCAACG ACGTGCTGCT GGGCGACCTC GGCGACGACA CGCTGGCCGG CGGCGCGGGC
ATCGACATCC TCACCGGTGG CGGCGATGCC GACGTTTTCG CCTTCGCGAC CGGCGACGCG
ACCTTCGCCA CGAGCGGCGC GCTCGCCTAC ATGACCGACA TGATCGCCGA CTTCACCGAC
GGCACCGACC ATATCCACCT GGGCTTCGGC GTGCCCAGCG GCGTCGCCTA TGATCCTGGC
GCGTTCGACA CGCTGGCCCA GGCTGTCGCC GCGGCGCAGG CCCGGCTCGA TGGCGGCGCG
GGCTTCACCG ACGTGGCGGT GCTCAAGGTC GGCGGCGACC TCTATCTCTT CTACGATCCG
GGCAGCTCGT CGCCGATCGA GGCGATCAAG CTCGCCGGCC TGTCCGATCC GGCCGCGATC
AGCGTGGCCG ACTTCGTCTG A
|
|---|
| Protein sequence | MASISSLQQT EVTFLSGINA SGILAGESYW TWNVDNPATY NPADNYTAKF GAGTAGTGAT
ISYAFDIASN WSAVEQSAFA SAAALWSAVA DVTFVQASPG TAEVILRRGS DGHASGGQNT
FFPGSTGTTT IGRARDGAIE IDTSAAGFGP IGSTFSEYGG YPYTTLVHEW GHVLGLGHGG
AYDESLDFGS PRYTSFDSRA WTLMSYNDPD SGFSWGTSRA SDGLLYRNTP VTPMPLDIVA
IQRIYGVAVD TPLSGGQVYG FNSNIAGPIA KYFDFTQNSR PIVTLWNKGV GNTLDVSGFT
SPSTIDLHDG AFSSVTGLKN DIAIAYGTRI DSAITGPGND TIVGNDNSNV IMAGAGNDSI
TGGSGNDHLY GAASRAVQGD GSDTITGGAG NDYLQGNAGD DRLDGGTGSD RIQGGQGNDS
IVGNSGNDSV NGNLGSDTID GGEGNDSLRG GQGGDSIQGG AGNDVLLGDL GDDTLAGGAG
IDILTGGGDA DVFAFATGDA TFATSGALAY MTDMIADFTD GTDHIHLGFG VPSGVAYDPG
AFDTLAQAVA AAQARLDGGA GFTDVAVLKV GGDLYLFYDP GSSSPIEAIK LAGLSDPAAI
SVADFV
|
|---|
| |