| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_0569 |
|---|
| Symbol | |
|---|
| ID | 5200656 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | + |
|---|
| Start bp | 620169 |
|---|
| End bp | 621362 |
|---|
| Gene Length | 1194 bp |
|---|
| Protein Length | 397 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 640580112 |
|---|
| Product | coproporphyrinogen III oxidase |
|---|
| Protein accession | YP_001261075 |
|---|
| Protein GI | 148553493 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0635] Coproporphyrinogen III oxidase and related Fe-S oxidoreductases |
|---|
| TIGRFAM ID | [TIGR00539] putative oxygen-independent coproporphyrinogen III oxidase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 33 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAAGGCT CGCTACCGCT CGCCACCCAC CCCCCGGCCC CCTCCCTTGA AAGGGAGGGG
GGGCTCGCCC TCTACATCCA TTGGCCCTTC TGCGTGTCGA AGTGCCCCTA TTGCGACTTC
AACAGCCATG TCCGCGAGAG CGTCGACCAG CAGGCATGGC GCGACGCGCT GCTCCGCGAC
CTGGCGCATG AGGCCGCCGC GCTTCCCGGC CGCCGGCTCG GCTCGATCTT CTTCGGCGGC
GGGACGCCGT CGCTGATGCC GCCGGCGACG GTCGCCGCGC TGATCGATGC CGCGACCCGC
CACTGGCCCG CCGCCGACGA CATCGAGATC ACGCTGGAGG CCAACCCTTC CTCGGTCGAG
GCCGCGCGCT TCGCCGATCT CGCCCGCGCC GGGATCAACC GCGTCTCGCT GGGTCTCCAG
GCGCTCGACG ATGCGGTGCT CGGCTGGCTC GGCCGTGCCC ATGGCGTGAC GGAGGGGCTG
GCCGCGCTCG ACACCGCCCA GACGAGTTTC GGGCGGGTCA GCTTCGACCT GATCTATGCC
CGGCCCGGCC AGACGCCCGA GGCCTGGGCC GCCGAGCTCG GCCGCGCCCT GTCGTTCGGC
ACCGAGCATC TCTCGCTCTA CCAGCTCACC ATCGAGCCCG GCACCCAGTT CGCGACCCGC
GTCGCCAAGG GCGAGTTCGT TCCGCTCGAT CCCGATGCCG GGGCCGAGCT GTTCGAGCAG
ACCCGCGCGG CCACCGCGGC GGCGGGGCTG CCCGCCTATG AAATCTCGAA CCATGCCCGC
CCCGGCGCGG AGAGCCGCCA CAACCTGACC TACTGGCGCT ACGGCAATTA TGCCGGGATC
GGCCCAGGCG CGCATGGCCG CCGCGACGGC CGCGCCACGG TACGCCGCAA GAAGCCCGAG
AACTGGCTCG CGCGGGTCGA GGCCAACGGC CATGGCATCG AGCGCGAGGA CGACCTCCCA
TCCGAGGCGC GGGCGCAGGA GGCGCTGCTG ATGGGGTTGC GGCTGGCCGA AGGCGTCGAC
CTCGCCCGGA TCGCCGCGAT GAGCGGCCTG CCGGTCGGGC GGCTCGTCGA TGCCATCGCC
ATCGACCGGT TGGCGCGACA GGGCCTGCTC GCCCGCGACG GCGACCGGCT GACCGTCAGC
GACGCCGGCA TGCTGCTGCT CGACGCGATC CTTGCCGAGA TCGTGACAGC CTAA
|
|---|
| Protein sequence | MEGSLPLATH PPAPSLEREG GLALYIHWPF CVSKCPYCDF NSHVRESVDQ QAWRDALLRD
LAHEAAALPG RRLGSIFFGG GTPSLMPPAT VAALIDAATR HWPAADDIEI TLEANPSSVE
AARFADLARA GINRVSLGLQ ALDDAVLGWL GRAHGVTEGL AALDTAQTSF GRVSFDLIYA
RPGQTPEAWA AELGRALSFG TEHLSLYQLT IEPGTQFATR VAKGEFVPLD PDAGAELFEQ
TRAATAAAGL PAYEISNHAR PGAESRHNLT YWRYGNYAGI GPGAHGRRDG RATVRRKKPE
NWLARVEANG HGIEREDDLP SEARAQEALL MGLRLAEGVD LARIAAMSGL PVGRLVDAIA
IDRLARQGLL ARDGDRLTVS DAGMLLLDAI LAEIVTA
|
|---|
| |