| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_0532 |
|---|
| Symbol | |
|---|
| ID | 5200659 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | - |
|---|
| Start bp | 576934 |
|---|
| End bp | 579744 |
|---|
| Gene Length | 2811 bp |
|---|
| Protein Length | 936 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640580073 |
|---|
| Product | TonB-dependent receptor |
|---|
| Protein accession | YP_001261038 |
|---|
| Protein GI | 148553456 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
|---|
| TIGRFAM ID | [TIGR01782] TonB-dependent receptor |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.0904706 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACATTCT TCGGTGCGAG CCGTGCCGCC ATCGCGCTCG GGCTCCTTTT CTCCACGTCG
GCGATGGCCG GCACGATCGT CGGTACCGTG TCCGACGCGT CGGGCACTCG CGCGCTGGAA
AGCGCCGAGG TCCGTATCGT CGAGCTCGGC CGCACGGTCG AGGCGTCGCG CGACGGCCGC
TATCGCTTCC CCGACGTGCC CGCCGGCACC TACACGGTCG AGGCGCGCTA CATCGGTGCC
GACACGGTGC GGACCACCGT CAAGGTGGCG GAGAGCGGCG ACAGCTATGC CGACATCGCG
ATGGGCGGCC GCGAGAGCAA TTCGATCATC GTCATCGGCC AGGCCGCGAA CCAGGCGAGC
ACCCTGTCGC GCCAGCGCGC CGCCGACGGT GTCGAGAGCG TGCTGACCCG CGACGCGATC
GGCCAGTTCC CCGACCAGAA CGTCGCCGAA TCGCTCCGCC GCCTGCCGGG CATCAACATC
CTCAACGACC AGGGCGAGGG CCGCTTCGTC TCGATCCGCG GTCTCGACCC CGAACTCAAC
GCCTCGACCG TCAACGGCGT TCGCCTGCCG GCGCCCGAAT CCGACGTCCG TTCGGTCGCG
CTCGACGTGA TTTCGAGCGA CATCATCGAA TCGATCGAGG TTCGCAAGTC GCTGACCCCC
GACATGGACG CCGATACGAT CGGCGGCTCG ATCGACATCA AGACGACCAG CGCGTTCGAT
CGCAAGAAGG ACCTGTTCAA GGTCTCAGCC GAGGGCAGCT ACAACGACCT GACCGACAAG
CTGTCGCCCA AGGGCAGCTT CGACTTCTCG ACCAAGCTCA CCGATGCGGT CGGCGTGTCG
GGCGGCCTGT CCTACTATCG GCGCCGCTTC GCGACTGACA ATATGGAGAT GGACGGCTGG
GACATCGACG ACAATGGCAA TGCCTATGCC GACACCGTCG AGTATCGCGA CTATGACGTG
ACCCGCAAGC GGCTCAGCGC GTCGCTGTCG TTCGATTTCA AGGTGGGCGA GAGCACCAAG
CTCTATGCGC GTGGCCTCTA CAGCCAGTTC GACGACCAGG AATATCGCCG CCGGCTGACC
TTCGAGATGG ACGAGGCGCC GACCAGCAGC ACCGCCAACA CCGCCAGCTT CGCGTCCGAC
GACGGCGAGA TCAGCGTCCA GCGCGACCTG AAGGACCGCT TCGAATCGCA GAAGATCCGC
TCGCTCGTGC TCGGTGGCGA GACCGAGACC GGACCCTGGA AGGCGACCTA TTCGGCGAGC
TGGGCCAAGT CGTCCGAACG CGAGAACGGC TCGATCGACC CGGTCAATTT CGAGCGCAAG
TTCGAGGACC CGGGCGAGTT CGGCGTGACC TTCGACTATA GCCGTCCGAA GCTCACCAGC
TATGCCGTCA CCACCGGCCA GGCGCGGTTC CTCGACCCGA GCGAATATGA ATTCGACAAG
GTCGAGCGCA CCACGCTGAG CGATGCCCGG GACGAGGAAT TCGCGATCAA GGCCGACGTC
TCGCGCGAAT ATGTGATGGA TGGCGGCGTC TTCACCGTCC AGGCGGGCGC CAAGCAGCGC
TGGCGCAAGA AGACCTACAA CGCCCAGTTC GACATCTATA AGGGCTTCAA CGGCGACCTG
ACCCTGGCCG ATTTCCTCGG CAAGCAGGAT TACGGCCTGG CGTCGATCGA CCCGGTGCTG
GCCAAGAAAT CCTTCCGGCC CTTCTTCCGC ACCAACATGG CCGATTTCGA GCTCGACCCG
TTCGACACCG ACCAGGCGTC GAACGAATCC GACTTCCGCG TCGACGAGGA TATCAGCGCC
GGCTACCTGC TCGGCCGCTG GGACAGCGAC AAGGTCCGCA TCATCGGCGG CGTCCGTGTC
GAGCATACCC GCAACAAGAT CCGCGGCAAC CAGGTCGAGC TGGTCGAGGA AGGCGACGAG
CATGACGGCG TGGAGGTCGA TGAGGACACC GTCTTCGTGA CCCCGCAGAG CTTCAAGCGC
AGCTACACCG ACTGGCTGCC GAGCTTCACC GTCCGCTACG AGCCGGTCCG CAACCTCGTG
CTGCGCGCCG CCGGCTACAA GAGCCTGGTG CGTCCGAAGC TGTCGAACCT CGCGCCGCGC
GCGGTGATCG AGGACAATGA GGGCGAGTTC GGCAACCCCG CGCTGAAGCC CTACAAGGCA
TGGAACGCCG ACCTGGCCGT CGAATATTAT TTCGGCCGGA ACGCCGCGAT CTCGGCCGGC
TTGTTCTACA AGGACATCAA GAATTACGTC GTCGAGGTCA CCAACCAGGA CGTCGCCTAT
AACGGCGTCA TCCTCGACGA GGCGACGACC TATGCCAACG GTCCCAAGGC CAAGGTGAAG
GGCTTCGAGT TCAGCTACAG CCAGGTCTAT GATTTCCTGC CGGCGCCGTT CGACGGGCTG
CTGACCCAGG TCAACTACAC CTACACCGAC GCCAAGGGCC GGGTGTTCAC CGACGGCGAT
ATCACCGATC CGCGCCGCAT CCCGCTGCCG GCCTCGTCGA AGCACACGCT CAACCTCGTG
CTCGGCTATG AGAAGGGGCC GCTCAGCCTG CGCGCCGCCG GCACCTTCCG CGACAAATAT
CTGGACGAGC TGGGCGGCGA TCCGACCGAG GATCGCTACG TCTCCAGCCA CTTCCAGCTC
GACCTGAGCG GCAAGTACCG GATCACCGAC AATATCCGCG TCTTCGCGGA GTGGGTGAAC
GTGACCGACC GTCCCTATTT CGCCTATCAG AACCTCGATG GCCGCCGCCG GCTGCTCCAA
TATGAGGAAT ATAGCTGGAC CGCGAAGTTC GGCGTGACGG CGAACTTCTG A
|
|---|
| Protein sequence | MTFFGASRAA IALGLLFSTS AMAGTIVGTV SDASGTRALE SAEVRIVELG RTVEASRDGR
YRFPDVPAGT YTVEARYIGA DTVRTTVKVA ESGDSYADIA MGGRESNSII VIGQAANQAS
TLSRQRAADG VESVLTRDAI GQFPDQNVAE SLRRLPGINI LNDQGEGRFV SIRGLDPELN
ASTVNGVRLP APESDVRSVA LDVISSDIIE SIEVRKSLTP DMDADTIGGS IDIKTTSAFD
RKKDLFKVSA EGSYNDLTDK LSPKGSFDFS TKLTDAVGVS GGLSYYRRRF ATDNMEMDGW
DIDDNGNAYA DTVEYRDYDV TRKRLSASLS FDFKVGESTK LYARGLYSQF DDQEYRRRLT
FEMDEAPTSS TANTASFASD DGEISVQRDL KDRFESQKIR SLVLGGETET GPWKATYSAS
WAKSSERENG SIDPVNFERK FEDPGEFGVT FDYSRPKLTS YAVTTGQARF LDPSEYEFDK
VERTTLSDAR DEEFAIKADV SREYVMDGGV FTVQAGAKQR WRKKTYNAQF DIYKGFNGDL
TLADFLGKQD YGLASIDPVL AKKSFRPFFR TNMADFELDP FDTDQASNES DFRVDEDISA
GYLLGRWDSD KVRIIGGVRV EHTRNKIRGN QVELVEEGDE HDGVEVDEDT VFVTPQSFKR
SYTDWLPSFT VRYEPVRNLV LRAAGYKSLV RPKLSNLAPR AVIEDNEGEF GNPALKPYKA
WNADLAVEYY FGRNAAISAG LFYKDIKNYV VEVTNQDVAY NGVILDEATT YANGPKAKVK
GFEFSYSQVY DFLPAPFDGL LTQVNYTYTD AKGRVFTDGD ITDPRRIPLP ASSKHTLNLV
LGYEKGPLSL RAAGTFRDKY LDELGGDPTE DRYVSSHFQL DLSGKYRITD NIRVFAEWVN
VTDRPYFAYQ NLDGRRRLLQ YEEYSWTAKF GVTANF
|
|---|
| |