| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_0508 |
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| Symbol | alaS |
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| ID | 5200765 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009511 |
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| Strand | - |
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| Start bp | 548149 |
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| End bp | 550812 |
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| Gene Length | 2664 bp |
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| Protein Length | 887 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 640580049 |
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| Product | alanyl-tRNA synthetase |
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| Protein accession | YP_001261014 |
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| Protein GI | 148553432 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0013] Alanyl-tRNA synthetase |
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| TIGRFAM ID | [TIGR00344] alanine--tRNA ligase |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.52047 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.80601 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCTCGA CCAACGACAT TCGCCGCTCG TTCCTCGACC ATTTCGCGAA GGAAGGGCAT
GAACTGGTGC CGTCGGCGCC GCTGGTGCCG CACAACGATC CCACGCTGAT GTTCGTCAAC
GCGGGCATGG TGCCGTTCAA GAATGTCTTC ACAGGCCTCG AGAAACGGCC CTATTCGACC
GCGACCTCGT CGCAGAAATG CGTGCGCGCC GGCGGCAAGC ACAATGATCT CGACAATGTC
GGATATACCG CGCGCCACCA CACCTTCTTC GAGATGCTCG GCAACTTCTC GTTCGGCGAC
TATTTCAAGG AACGCGCGAT CAGCCTCGCC TGGAGCCTGA TCACCGGCAC CTGGGGCATC
CCGGCCGACC GGCTGACCGT CACCGTCTTC CACACCGACG ACGAGGCGTT CGACCTGTGG
AAGAAGATCG GCATGCCCGA CAGCCGGATC ATCCGCATCC CGACCTCGGA CAATTTCTGG
TCGATGGGCG ACACCGGCCC CTGCGGTCCC TGCTCGGAGA TCTTCTACGA TCATGGCGCG
CACATCCCCG GCGGCCCTCC CGGCAGCCCG GACGAGGATG GCGACCGCTT CGTCGAGATC
TGGAACCTCG TCTTCATGCA ATATGAGCAG GTCGACAAGG AGACCCGCAT CGACCTGCCG
AGGCCGTCGA TCGACACCGG CATGGGTCTG GAGCGCATCG CGGCGGTGCT GCAGGGCGTC
CACGACAATT ACGATACGGA CACCTTCAAG GCGCTGATCG CCGCCTCGGG CGAATTGACC
CGGACGGCGA CCAATGGCGA CTTCAAGGCG TCGCACCGCG TCATCGCCGA TCACTTGCGC
GCCTCGGGCT TCCTGGTGGC GGACGGCGTG CTGCCGGCCA ATGAGGGCCG CGGCTACGTC
CTGCGCCGGA TCATGCGCCG CGCGATGCGC CACGCGCACC TGCTCGGCGC GGCCGAGCCG
CTGATGCACC GCCTGGTGCC GAGCCTCGTC GCCGAGATGG GCGCCGCCTA TCCCGAACTG
GTCCGCGCGC AGCCGCTGAT CGAGGAGACG CTGAAGCTGG AGGAGACCCG CTTCCGCCAG
ACGCTGGCCA ACGGCCTGCG CCTGCTCGAC GAGGCGACCG GCGCGATGAA GCCGGGCGAC
GTTCTGCCCG GCGCGGTCGC GTTCAAGCTC TACGACACCT TCGGCTTCCC CTACGACCTG
ACCGAGGACG CGCTGCGCGC GCAGGACCTG GGCGTCGACC GGAGCGGCTT CGACGCGGCG
ATGGCCGAGC AGAAGGCCGC CGCGCGCGCC GCCTGGAAGG GATCGGGCGA GAAGGCGTCG
GACGAGGTCT GGTTCGATAT CGCCGAGGAG TTCGGCGGCA CCGAGTTCAC CGGCTATGTC
AGCGAGGAGG GCGACGGCCA GCTCCTCGCC ATCGTCAAGG ACGGCCAGCG CGTCGCCGAG
GCGAAGGCGG GCGACGAGGT GGTGCTGGTC ACCAACCAGA CCCCCTTCTA CGGCGAGAGC
GGCGGCCAGA TGGGCGATGC CGGCCGGATC ACCGGCGACG ACGGCCTGGA GATCGCGGTC
GAGGACACCG CCAAGCCGCT CGGCCGCGTG CATGCGCATC GCGGCACGGT GGTGAGCGGG
TCGGTCCGGA CCGGCGATGC GCTCCACCTG GTCGTCGACG GCGATCGCCG CACCCGTATC
CGCGCCAACC ATTCGGCGAC CCACCTGCTC CACGCGGCGC TGCGCAACCG GCTCGGCAGC
CATGTGACCC AGAAGGGTAG TCTCGTCGCG GCCGACCGCT TCCGCTTCGA CTTCTCGCAC
CCCAAGGCGC TGACGCCCGA GGACATCGCC GCGATCGAGG CCGAGGTGAA CCGCCACATC
CGCGAGAATG ACGAGGTCAC CACCCGGCTG ATGACCCCCG ACGCCGCGAT CGAGGCCGGC
GCGATGGCGC TGTTCGGCGA GAAATATGGC GACGAGGTGC GCGTCCTGTC GATGGGCAAG
GCGGGCCGCG ACCTCGGCGC GAAGAGCTAT TCGGTCGAGC TGTGCGGCGG CACCCATGTC
TCCGCGCTCG GCGATATCGC GCTGTTCAAG ATCATCTCCG AAAGCGCGGT GTCGAGCGGC
GTGCGCCGCA TCGAGGCGCT GACCGGCGAG GCCGCGCGCC AATGGCTGAC CCAGCGCGAC
GAGAAGCTCA AGGAAGCCGC CGCGGCGCTC AAGACCGCGC CCGACGACGT GCCCGCGCGC
ATCGCCGTGC TGGTCGAGGA GCGCCGCAAG CTCGAACGCG AGCTGGCCGA GGCGAAGAAG
GCGCTGGCGC TGGGCGGCGG CTCCAAGGCC GAGGCGGCGG GCCCCGAGGA CGTCGCGGGG
GTGAAGTTCC TGCCGCAGGT CGTCGACGGG CTCGATCCCA AGGGGCTGCG CGGACTGGTC
GACGACGCCA AGGCCTCGCT CGGCTCGGGC GTGTCGGTGA TCGTCGCGGT CAATGACGGC
CGGGCGAGCG TCGCGGCCGG CGTCACCGCC GACCTGGTCG ACCGGATCAG CGCGGTCGAC
CTCGTCAAGG CCGCGGTGGC GGCGCTGGGC GGGCAGGGCG GCGGCGGCCG TCCCGACATG
GCGCAGGGCG GCGGCCCCGA CGGCGACAAG GCCGCCGATG CGGTGGCGGC GGTCCGCGAC
GCGCTGGCGA AGGTTCCGGC CTAA
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| Protein sequence | MTSTNDIRRS FLDHFAKEGH ELVPSAPLVP HNDPTLMFVN AGMVPFKNVF TGLEKRPYST
ATSSQKCVRA GGKHNDLDNV GYTARHHTFF EMLGNFSFGD YFKERAISLA WSLITGTWGI
PADRLTVTVF HTDDEAFDLW KKIGMPDSRI IRIPTSDNFW SMGDTGPCGP CSEIFYDHGA
HIPGGPPGSP DEDGDRFVEI WNLVFMQYEQ VDKETRIDLP RPSIDTGMGL ERIAAVLQGV
HDNYDTDTFK ALIAASGELT RTATNGDFKA SHRVIADHLR ASGFLVADGV LPANEGRGYV
LRRIMRRAMR HAHLLGAAEP LMHRLVPSLV AEMGAAYPEL VRAQPLIEET LKLEETRFRQ
TLANGLRLLD EATGAMKPGD VLPGAVAFKL YDTFGFPYDL TEDALRAQDL GVDRSGFDAA
MAEQKAAARA AWKGSGEKAS DEVWFDIAEE FGGTEFTGYV SEEGDGQLLA IVKDGQRVAE
AKAGDEVVLV TNQTPFYGES GGQMGDAGRI TGDDGLEIAV EDTAKPLGRV HAHRGTVVSG
SVRTGDALHL VVDGDRRTRI RANHSATHLL HAALRNRLGS HVTQKGSLVA ADRFRFDFSH
PKALTPEDIA AIEAEVNRHI RENDEVTTRL MTPDAAIEAG AMALFGEKYG DEVRVLSMGK
AGRDLGAKSY SVELCGGTHV SALGDIALFK IISESAVSSG VRRIEALTGE AARQWLTQRD
EKLKEAAAAL KTAPDDVPAR IAVLVEERRK LERELAEAKK ALALGGGSKA EAAGPEDVAG
VKFLPQVVDG LDPKGLRGLV DDAKASLGSG VSVIVAVNDG RASVAAGVTA DLVDRISAVD
LVKAAVAALG GQGGGGRPDM AQGGGPDGDK AADAVAAVRD ALAKVPA
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