| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_0404 |
|---|
| Symbol | |
|---|
| ID | 5196945 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | + |
|---|
| Start bp | 429538 |
|---|
| End bp | 430674 |
|---|
| Gene Length | 1137 bp |
|---|
| Protein Length | 378 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 640579942 |
|---|
| Product | diguanylate cyclase |
|---|
| Protein accession | YP_001260910 |
|---|
| Protein GI | 148553328 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.012365 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTACGAAG GAAAGCCGCC ATCCTCCGCC GGCCGCAAGG GCTGGAGCTT CGATGCGCTG
TTCGGCCGCT CGGCCGTAGA CGACTCCGCC GCCGTCCCGG CCGCGCAGGT GCCCGTCCCG
GCCGGCCCGG ACGATGCCCC GCCGACCGAT CTGTTCGGCC GGATCGGCGG CTTCCTGCGC
ACCCACCGGC TCGATCCGAG CCCGATCAAC TATGACCTGG CCTATCAGTA TATCGGCGGC
CATGATCCGG CGCTGGTCGC CTCGGTCGAT GCCGCGATCG CGCGCGACGG CCTGCTGCGC
CACGACGTCG CCCAGGAGAT CGCCGAGGCG GCGTCGAGCC GGGTGTCGTC CGACCTGCTC
GGCAAGCTGA TCGACCAGGC GCACCGCAGC GTCACCCTGG CCGCCGCGCT GGTCGGGCAG
TCGCGCACCG ATGCCAGGGC CTATGGCAGC GCGCTCGACC GCGGTTCGGC GGCGATCGAG
GCCGGCGGCG AACCGGCGGG CCGCGCGCTC GAACTGATGG CCGAGCTGAC CCGCACGATG
ATCGACAAGA CCAACGACGC CGAGCGCCGC CTGGTCGAGA TGGGCAGCCA GATGAGCAGC
CTGCAGGGCG AACTGGCCGA GGCCCAGGCG GTGGCCGAGA GCGACCCGCT GACCGGTCTC
GCCAACCGCC GGGCCTTCCA GGCTCGCCTC GCGCGGGCGA TGGCGCAGGC GGCGGCGGAA
GGCACGCCGC TGTCGGTTGC CTTCTGCGAC ATCGATCATT TCAAGTCGAT CAACGACAAT
CACGGCCATG ACACCGGCGA CCGGATATTG AAGATGGTGG CCGAGGCGCT GGTCGAGGGC
GTCGGCGAGG ACGCGTTCGT CGGCCGCTTC GGCGGCGAGG AATTCCTCAT CCTGTTCGAT
GGCATCATGG CGCGCCGCGC GGCGATGCGT GTCGACGAGG TTCGCGACGA ACTGTCGGGC
CGCCACCTCG TCTCCAAGAC CACCGGCGAA CCGCTCGGCA CCGTCACCTT CTCGGCCGGC
GTCGCCCAAC TGTTGGTGGG CGAGGACGAC GGCGCGATGC TCCGCCGCGC CGACGAAGCG
CTCTACGCGG CGAAGAATGG CGGCCGCAAC CGGGTGATCA TCCACGGCGA GGAATAG
|
|---|
| Protein sequence | MYEGKPPSSA GRKGWSFDAL FGRSAVDDSA AVPAAQVPVP AGPDDAPPTD LFGRIGGFLR
THRLDPSPIN YDLAYQYIGG HDPALVASVD AAIARDGLLR HDVAQEIAEA ASSRVSSDLL
GKLIDQAHRS VTLAAALVGQ SRTDARAYGS ALDRGSAAIE AGGEPAGRAL ELMAELTRTM
IDKTNDAERR LVEMGSQMSS LQGELAEAQA VAESDPLTGL ANRRAFQARL ARAMAQAAAE
GTPLSVAFCD IDHFKSINDN HGHDTGDRIL KMVAEALVEG VGEDAFVGRF GGEEFLILFD
GIMARRAAMR VDEVRDELSG RHLVSKTTGE PLGTVTFSAG VAQLLVGEDD GAMLRRADEA
LYAAKNGGRN RVIIHGEE
|
|---|
| |