| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_0331 |
|---|
| Symbol | |
|---|
| ID | 5200888 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | - |
|---|
| Start bp | 354181 |
|---|
| End bp | 355113 |
|---|
| Gene Length | 933 bp |
|---|
| Protein Length | 310 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 640579871 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_001260840 |
|---|
| Protein GI | 148553258 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.0181126 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGGGAA GACTCGAGGG CAAGGTGGCG GTGGTGACCG GCGCCGGACG CAATATCGGC
CGGGCCGAGG CGATGCTGCT GGCCGAACAG GGCGCGCGGG TGGTGGTCAA CGATCTCGGC
GGCGGACCCT ATGGCACCGA GGCGGCCGAC GCCTCGCTGG CTGAAACTGT CGCCAAGGAG
ATACGCGACG TGGGCGGCGA GGCGATCGGC CAATGTTCGA GCGTCGCGAC CCGCGACGGC
GCCGAGGCGG CGGTCCAGGC CGCGATCGAC CGGTGGGGCC GGATCGACAT CCTCGTCAAC
AACGCCGGCA TCGTCCGCCC CGCGCGCATC GACCGGATGA CCGACGAGGA CTGGCGGCTC
TGCGTCGACG TCAGCCTGAC CGCGACCTTC CACAGCTGCC GCGCCGCCGC CCGGCACATG
ATCGGGCAGC GATCGGGCGC GATCGTCAAC ACCGGCTCGC CATCCGGCTT CGGCCATTGG
GGGATGGGCA ATTATTCGGC CGCCAAGGAA GGCGTGCTCG GCCTCACCCG CTCGATCGCG
CGCGACCTGG GCGAGTTCGG CGTCCGCTGC AACATGATCC GGCCGGTGTC GCACCTGACC
GGCACCCACA CGCCGGAGAT CGACGCGACG ATCGCGGAAT CGGCACGGCT CGGCATCCCG
CTGCTGTGGA ACAAGCCGAT GGCGGCGCCG CGCATGACCG CCCTGCCCGA GCATGTCGCC
GCACTGGTGG CGTGGCTCTG CACCGACGCC GCCGGCCATG TCAGCGGCCG CGACTTCTAC
ATCCAGGGCG ACGAGGTGGC GCTGATCCCC GAGCCCGAGG CGATCCGCAC CAGCTTCCAT
CCCGGCGGCT GGACGCTCGA CGCCTTCGAC GAGGAGGCCA ACCGCGCCTA TCTGTTCGGT
GACATTCCCA ACCGCTTCGT CAGGCGCGAC TGA
|
|---|
| Protein sequence | MAGRLEGKVA VVTGAGRNIG RAEAMLLAEQ GARVVVNDLG GGPYGTEAAD ASLAETVAKE
IRDVGGEAIG QCSSVATRDG AEAAVQAAID RWGRIDILVN NAGIVRPARI DRMTDEDWRL
CVDVSLTATF HSCRAAARHM IGQRSGAIVN TGSPSGFGHW GMGNYSAAKE GVLGLTRSIA
RDLGEFGVRC NMIRPVSHLT GTHTPEIDAT IAESARLGIP LLWNKPMAAP RMTALPEHVA
ALVAWLCTDA AGHVSGRDFY IQGDEVALIP EPEAIRTSFH PGGWTLDAFD EEANRAYLFG
DIPNRFVRRD
|
|---|
| |